View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1306_low_10 (Length: 498)

Name: NF1306_low_10
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1306_low_10
NF1306_low_10
[»] chr1 (2 HSPs)
chr1 (378-495)||(2334931-2335048)
chr1 (221-295)||(2335131-2335205)
[»] chr5 (14 HSPs)
chr5 (378-485)||(20371705-20371812)
chr5 (378-485)||(20397429-20397536)
chr5 (217-295)||(7254197-7254273)
chr5 (217-295)||(7261639-7261715)
chr5 (229-285)||(26552351-26552407)
chr5 (169-285)||(29885459-29885577)
chr5 (227-286)||(36370318-36370377)
chr5 (227-286)||(36994981-36995040)
chr5 (227-286)||(37008919-37008978)
chr5 (229-286)||(25449672-25449729)
chr5 (169-285)||(29902035-29902153)
chr5 (229-285)||(23576589-23576645)
chr5 (227-271)||(36384261-36384305)
chr5 (229-286)||(25676874-25676931)
[»] chr4 (4 HSPs)
chr4 (169-295)||(15567000-15567129)
chr4 (169-295)||(15579645-15579774)
chr4 (94-166)||(15879416-15879488)
chr4 (230-285)||(18216542-18216597)
[»] chr2 (7 HSPs)
chr2 (378-485)||(35039010-35039117)
chr2 (376-485)||(21069241-21069352)
chr2 (229-286)||(39650514-39650571)
chr2 (231-298)||(21069126-21069193)
chr2 (229-284)||(22935160-22935215)
chr2 (229-284)||(22941124-22941179)
chr2 (229-284)||(22955019-22955074)
[»] chr6 (5 HSPs)
chr6 (383-481)||(15390412-15390510)
chr6 (169-295)||(15665416-15665546)
chr6 (227-286)||(16324643-16324702)
chr6 (229-286)||(18964629-18964686)
chr6 (229-286)||(20531761-20531819)
[»] chr3 (14 HSPs)
chr3 (376-485)||(15910159-15910268)
chr3 (376-485)||(15924402-15924511)
chr3 (221-286)||(21608292-21608357)
chr3 (221-286)||(21616920-21616985)
chr3 (169-286)||(19834215-19834335)
chr3 (227-286)||(46372128-46372187)
chr3 (227-286)||(46386255-46386314)
chr3 (229-286)||(15528075-15528132)
chr3 (229-285)||(46392468-46392524)
chr3 (229-285)||(46400216-46400272)
chr3 (229-286)||(15536764-15536821)
chr3 (230-286)||(5650848-5650904)
chr3 (231-286)||(15924257-15924312)
chr3 (229-286)||(15609565-15609622)
[»] scaffold0484 (2 HSPs)
scaffold0484 (378-485)||(10495-10602)
scaffold0484 (169-298)||(10685-10816)
[»] scaffold0014 (1 HSPs)
scaffold0014 (169-294)||(4557-4685)
[»] scaffold0094 (2 HSPs)
scaffold0094 (376-485)||(29596-29705)
scaffold0094 (231-286)||(29795-29850)
[»] scaffold0503 (2 HSPs)
scaffold0503 (86-166)||(1256-1336)
scaffold0503 (86-166)||(5823-5903)
[»] scaffold0770 (2 HSPs)
scaffold0770 (86-162)||(1550-1626)
scaffold0770 (233-286)||(1760-1812)
[»] scaffold0029 (4 HSPs)
scaffold0029 (86-162)||(99854-99930)
scaffold0029 (217-286)||(21049-21116)
scaffold0029 (217-286)||(34790-34857)
scaffold0029 (233-286)||(100064-100116)
[»] scaffold0077 (1 HSPs)
scaffold0077 (86-166)||(323-403)
[»] chr8 (2 HSPs)
chr8 (86-166)||(24487277-24487357)
chr8 (221-290)||(15708054-15708123)
[»] scaffold0755 (1 HSPs)
scaffold0755 (221-286)||(1794-1859)
[»] chr7 (12 HSPs)
chr7 (229-286)||(15684594-15684651)
chr7 (221-286)||(42630345-42630410)
chr7 (221-286)||(8810913-8810978)
chr7 (221-286)||(8818727-8818792)
chr7 (221-286)||(9461436-9461501)
chr7 (221-286)||(9475194-9475259)
chr7 (221-286)||(16387566-16387631)
chr7 (221-286)||(16401693-16401758)
chr7 (111-166)||(42017132-42017187)
chr7 (221-286)||(30364113-30364178)
chr7 (221-286)||(30378178-30378243)
chr7 (169-207)||(36899197-36899235)
[»] scaffold0067 (1 HSPs)
scaffold0067 (221-286)||(43672-43737)
[»] scaffold1575 (1 HSPs)
scaffold1575 (229-295)||(917-984)
[»] scaffold0815 (1 HSPs)
scaffold0815 (231-285)||(4215-4269)
[»] scaffold1271 (1 HSPs)
scaffold1271 (229-285)||(1019-1075)
[»] scaffold0269 (1 HSPs)
scaffold0269 (229-282)||(13731-13784)
[»] scaffold0182 (1 HSPs)
scaffold0182 (217-285)||(6156-6222)
[»] scaffold0435 (1 HSPs)
scaffold0435 (229-285)||(7563-7619)
[»] scaffold0034 (1 HSPs)
scaffold0034 (229-285)||(118645-118701)
[»] scaffold1855 (1 HSPs)
scaffold1855 (217-285)||(261-327)
[»] scaffold0362 (1 HSPs)
scaffold0362 (229-286)||(3809-3866)
[»] scaffold0101 (2 HSPs)
scaffold0101 (111-166)||(15923-15976)
scaffold0101 (250-286)||(15735-15771)
[»] scaffold1761 (1 HSPs)
scaffold1761 (230-285)||(574-629)
[»] scaffold0422 (1 HSPs)
scaffold0422 (233-285)||(5671-5723)


Alignment Details
Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 378 - 495
Target Start/End: Complemental strand, 2335048 - 2334931
Alignment:
Q  378 tgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgatcc 477  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  2335048 tgtgaactacagcctatatataggcctctttgatcccatacgcgtgggtgtacggccttaccatgcacccacgcacccttgtcctttgaatctttgatcc 2334949  T
Q  478 tgtggtctgtgctcctcc 495  Q
    |||||||| |||| ||||    
T  2334948 tgtggtctatgctgctcc 2334931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 2335205 - 2335131
Alignment:
Q  221 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccccatcctttcc 295  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||    
T  2335205 ataagttggtagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccccatcccttcc 2335131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 378 - 485
Target Start/End: Complemental strand, 20371812 - 20371705
Alignment:
Q  378 tgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgatcc 477  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||| |||| | ||||||||||||||||| |||||||||||||||| ||||||||||    
T  20371812 tgtgaactacagcctatatatagccctctttgatcccatacgcgtgggtgtatggccttaccatgcacccacacacccttgtcctttgaatctttgatcc 20371713  T
Q  478 tgtggtct 485  Q
    ||||||||    
T  20371712 tgtggtct 20371705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 378 - 485
Target Start/End: Complemental strand, 20397536 - 20397429
Alignment:
Q  378 tgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgatcc 477  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||| |||| | ||||||||||||||||| |||||||||||||||| ||||||||||    
T  20397536 tgtgaactacagcctatatatagccctctttgatcccatacgcgtgggtgtatggccttaccatgcacccacacacccttgtcctttgaatctttgatcc 20397437  T
Q  478 tgtggtct 485  Q
    ||||||||    
T  20397436 tgtggtct 20397429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 217 - 295
Target Start/End: Complemental strand, 7254273 - 7254197
Alignment:
Q  217 aaatataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccccatcctttcc 295  Q
    |||||||||||  |||||||||||| |||||| ||||||||||||||||||||||  ||||||||||||||||||||||    
T  7254273 aaatataagtt--tagggttccggcacggtggcgccgccgcactggccggccaaccaccgccggaaccccatcctttcc 7254197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 217 - 295
Target Start/End: Complemental strand, 7261715 - 7261639
Alignment:
Q  217 aaatataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccccatcctttcc 295  Q
    |||||||||||  |||||||||||| |||||| ||||||||||||||||||||||  ||||||||||||||||||||||    
T  7261715 aaatataagtt--tagggttccggcacggtggcgccgccgcactggccggccaaccaccgccggaaccccatcctttcc 7261639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 26552407 - 26552351
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 285  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  26552407 ttagggttccggcgcggtggtgccgccgcaccggccggccaaccgccgccggaaccc 26552351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 169 - 285
Target Start/End: Original strand, 29885459 - 29885577
Alignment:
Q  169 agaatcgagtagaggagaaaagaacaagtagaaggaaccnnnnnnnntaaata--taagttgttagggttccggcgcggtggtgccgccgcactggccgg 266  Q
    ||||||||||||||||||| |||||||||||||||||||         ||| |  ||||||||||||||||||||||||||| |||||| ||| ||| ||    
T  29885459 agaatcgagtagaggagaagagaacaagtagaaggaaccaaaaaaatcaaaaaaataagttgttagggttccggcgcggtggcgccgccccacaggctgg 29885558  T
Q  267 ccaactgccgccggaaccc 285  Q
    ||||| ||| |||||||||    
T  29885559 ccaaccgccaccggaaccc 29885577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 36370377 - 36370318
Alignment:
Q  227 tgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  36370377 tgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 36370318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 36995040 - 36994981
Alignment:
Q  227 tgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||  |||||||||||||    
T  36995040 tgttagggttccggcgcggtggcgccgccgcactagccggccaaccaccgccggaacccc 36994981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 37008978 - 37008919
Alignment:
Q  227 tgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||  |||||||||||||    
T  37008978 tgttagggttccggcgcggtggcgccgccgcactagccggccaaccaccgccggaacccc 37008919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 25449729 - 25449672
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    |||||||||||||| ||||| ||||||||||||||||||||||  |||||||||||||    
T  25449729 ttagggttccggcgtggtggcgccgccgcactggccggccaaccaccgccggaacccc 25449672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 285
Target Start/End: Original strand, 29902035 - 29902153
Alignment:
Q  169 agaatcgagtagaggagaaaagaacaagtagaaggaacc--nnnnnnnntaaatataagttgttagggttccggcgcggtggtgccgccgcactggccgg 266  Q
    ||||||||||||||||||| |||||||||||||||||||           ||| |||||||||||||||||||||||||||| |||||| |||  ||  |    
T  29902035 agaatcgagtagaggagaagagaacaagtagaaggaaccaaaaaaatcaaaaaaataagttgttagggttccggcgcggtggcgccgccccacaagctag 29902134  T
Q  267 ccaactgccgccggaaccc 285  Q
    ||||| ||| |||||||||    
T  29902135 ccaaccgccaccggaaccc 29902153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 23576645 - 23576589
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 285  Q
    |||||||||||||||||||||||||||| || || |||||||| || ||||||||||    
T  23576645 ttagggttccggcgcggtggtgccgccgtaccggtcggccaaccgctgccggaaccc 23576589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 36384305 - 36384261
Alignment:
Q  227 tgttagggttccggcgcggtggtgccgccgcactggccggccaac 271  Q
    |||||||||||||||||||||| ||||||| |||||||| |||||    
T  36384305 tgttagggttccggcgcggtggcgccgccgaactggccgtccaac 36384261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 25676931 - 25676874
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    ||||||||||||||||| |||||||||| || ||||||||| | | | ||||||||||    
T  25676931 ttagggttccggcgcggaggtgccgccgtaccggccggccagccgtcaccggaacccc 25676874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 169 - 295
Target Start/End: Complemental strand, 15567129 - 15567000
Alignment:
Q  169 agaatcgagtagaggagaaaagaacaagtagaaggaaccnnnnnnnnt---aaatataagttgttagggttccggcgcggtggtgccgccgcactggccg 265  Q
    |||||||||||||||||||||||||||||||||||||||        |   ||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  15567129 agaatcgagtagaggagaaaagaacaagtagaaggaaccgaaaaaaatcaaaaaaataagttgttagggttccggcgcggtggtgccgccacactggccg 15567030  T
Q  266 gccaactgccgccggaaccccatcctttcc 295  Q
    |||||||||||||| |||||||||||||||    
T  15567029 gccaactgccgccgaaaccccatcctttcc 15567000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 169 - 295
Target Start/End: Complemental strand, 15579774 - 15579645
Alignment:
Q  169 agaatcgagtagaggagaaaagaacaagtagaaggaaccnnnnnnnnt---aaatataagttgttagggttccggcgcggtggtgccgccgcactggccg 265  Q
    |||||||||||||||||||||||||||||||||||||||        |   ||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  15579774 agaatcgagtagaggagaaaagaacaagtagaaggaaccaaaaaaaatcaaaaaaataagttgttagggttccggcgcgatggtgccgccgcactggccg 15579675  T
Q  266 gccaactgccgccggaaccccatcctttcc 295  Q
     |||||||||||||||||||||||||||||    
T  15579674 accaactgccgccggaaccccatcctttcc 15579645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 15879488 - 15879416
Alignment:
Q  94 cgtcgccaaccacaactacaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 166  Q
    |||| |||||||||||||||||||||  |||| |||| |||||||||||||||||||||||||||||||||||    
T  15879488 cgtcaccaaccacaactacaacacattcgttgtcgtcacaaacaacagcaaacaaccgggttcatccaaaggt 15879416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 285
Target Start/End: Original strand, 18216542 - 18216597
Alignment:
Q  230 tagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 285  Q
    |||||||||||| |||||||| |||||||| ||||| ||||| |||||||||||||    
T  18216542 tagggttccggcacggtggtgtcgccgcaccggccgaccaaccgccgccggaaccc 18216597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 378 - 485
Target Start/End: Original strand, 35039010 - 35039117
Alignment:
Q  378 tgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgatcc 477  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||| |||||| ||||||||||||||||||||||||||| |||||| ||||||||||    
T  35039010 tgtgaactacagcctatatataggcctctttgatctcatacgcgtgggtgtacggccttaccatgcacccacgcacccttgttctttgaatctttgatcc 35039109  T
Q  478 tgtggtct 485  Q
    ||||||||    
T  35039110 tgtggtct 35039117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 376 - 485
Target Start/End: Original strand, 21069241 - 21069352
Alignment:
Q  376 tctgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgatt--ctttg 473  Q
    ||||||||||||||||||||||||| |||| |||||||||| || || | |||||| ||||||||||||||||||||||||||||||||||||   ||||    
T  21069241 tctgtgaactacagcctatatataggcctctttgatcccatgcgtgtaggtgtacgaccttaccatgcacccacgcacccttgtcctttgatttgttttg 21069340  T
Q  474 atcctgtggtct 485  Q
    ||||||||||||    
T  21069341 atcctgtggtct 21069352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 39650514 - 39650571
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    |||||||||||||| ||||| ||||||||||||||||||||||  |||||||||||||    
T  39650514 ttagggttccggcgtggtggcgccgccgcactggccggccaaccaccgccggaacccc 39650571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 21069126 - 21069193
Alignment:
Q  231 agggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccccatcctttccatc 298  Q
    |||||||||||||||||| ||||||| || |  |||||||| |||||||||||||||||| |||||||    
T  21069126 agggttccggcgcggtggcgccgccgtaccgatcggccaaccgccgccggaaccccatcccttccatc 21069193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 22935160 - 22935215
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacc 284  Q
    |||||||||||||| ||||| ||||||||||||||||||||||  |||||||||||    
T  22935160 ttagggttccggcgtggtggcgccgccgcactggccggccaaccaccgccggaacc 22935215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 22941124 - 22941179
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacc 284  Q
    |||||||||||||| ||||| ||||||||||||||||||||||  |||||||||||    
T  22941124 ttagggttccggcgtggtggcgccgccgcactggccggccaaccaccgccggaacc 22941179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 22955019 - 22955074
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacc 284  Q
    |||||||||||||| ||||| ||||||||||||||||||||||  |||||||||||    
T  22955019 ttagggttccggcgtggtggcgccgccgcactggccggccaaccaccgccggaacc 22955074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 383 - 481
Target Start/End: Complemental strand, 15390510 - 15390412
Alignment:
Q  383 actacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgatcctgtg 481  Q
    |||||||||||||||||| |||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15390510 actacagcctatatataggcctctttgatcccatacgcgtgggtgtacggccttaccatgcacccacgcacccttgtcctttgaatctttgatcctgtg 15390412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 169 - 295
Target Start/End: Complemental strand, 15665546 - 15665416
Alignment:
Q  169 agaatcgagtagaggagaaaagaacaagtagaaggaaccnnnnnnnnta----aatataagttgttagggttccggcgcggtggtgccgccgcactggcc 264  Q
    |||||||||||||||||||||||||||||||||||||||         |    || |||||||||||||| |||||||||||||||||||||| ||||||    
T  15665546 agaatcgagtagaggagaaaagaacaagtagaaggaaccaaaaaaaaaatcaaaaaataagttgttagggctccggcgcggtggtgccgccgcgctggcc 15665447  T
Q  265 ggccaactgccgccggaaccccatcctttcc 295  Q
    |||||||||||||||||||||||||||||||    
T  15665446 ggccaactgccgccggaaccccatcctttcc 15665416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 16324702 - 16324643
Alignment:
Q  227 tgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  16324702 tgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 16324643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 18964686 - 18964629
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    |||||||||||||| ||||| ||||||||||||||||||||||  |||||||||||||    
T  18964686 ttagggttccggcgtggtggcgccgccgcactggccggccaaccaccgccggaacccc 18964629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 20531819 - 20531761
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactgg-ccggccaactgccgccggaacccc 286  Q
    ||||||||||||||||| ||||||| ||||| || |||||||||  |||||||||||||    
T  20531819 ttagggttccggcgcggaggtgccgtcgcaccggcccggccaaccaccgccggaacccc 20531761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 376 - 485
Target Start/End: Original strand, 15910159 - 15910268
Alignment:
Q  376 tctgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgat 475  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |||| ||||||| ||||||||||| |||||||||| |||||||    
T  15910159 tctgtgaactacagcctatatataggcctctttgatcccatacgcgtgggtgtacggccttgccatgcatccacgcaccctggtcctttgatcctttgat 15910258  T
Q  476 cctgtggtct 485  Q
    ||||||||||    
T  15910259 cctgtggtct 15910268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 376 - 485
Target Start/End: Original strand, 15924402 - 15924511
Alignment:
Q  376 tctgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgat 475  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |||| ||||| | ||||||||||| |||||||||| |||||||    
T  15924402 tctgtgaactacagcctatatataggcctctttgatcccatacgcgtgggtgtacggccttgccatggatccacgcaccctggtcctttgatcctttgat 15924501  T
Q  476 cctgtggtct 485  Q
    ||||||||||    
T  15924502 cctgtggtct 15924511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 21608292 - 21608357
Alignment:
Q  221 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  21608292 ataagttgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 21608357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 21616920 - 21616985
Alignment:
Q  221 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  21616920 ataagttgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 21616985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 169 - 286
Target Start/End: Original strand, 19834215 - 19834335
Alignment:
Q  169 agaatcgagtagaggagaaaagaacaagtagaaggaaccnnnnnnnntaaata---taagttgttagggttccggcgcggtggtgccgccgcactggccg 265  Q
    |||||||||||||||||||||||||||||||||||||||         ||| |   |||||||||||||||||||| |||||| |||||| ||| |||||    
T  19834215 agaatcgagtagaggagaaaagaacaagtagaaggaaccaaaaaaaccaaaaaaaataagttgttagggttccggcacggtggcgccgcctcaccggccg 19834314  T
Q  266 gccaactgccgccggaacccc 286  Q
    |||| | ||||||||||||||    
T  19834315 gccagccgccgccggaacccc 19834335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 46372128 - 46372187
Alignment:
Q  227 tgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  46372128 tgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 46372187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 46386255 - 46386314
Alignment:
Q  227 tgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  46386255 tgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 46386314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 15528132 - 15528075
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    ||||||||||||| |||||| |||||||||| ||| ||||||||||||||||||||||    
T  15528132 ttagggttccggcacggtggcgccgccgcaccggctggccaactgccgccggaacccc 15528075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 46392524 - 46392468
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 285  Q
    |||||||||||||| ||||| |||||||||| ||||||||||| |||||||||||||    
T  46392524 ttagggttccggcgtggtggcgccgccgcaccggccggccaaccgccgccggaaccc 46392468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 46400272 - 46400216
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 285  Q
    |||||||||||||| ||||| |||||||||| ||||||||||| |||||||||||||    
T  46400272 ttagggttccggcgtggtggcgccgccgcaccggccggccaaccgccgccggaaccc 46400216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 15536821 - 15536764
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    ||||||||||||| |||||| |||||||||| ||| ||||||| ||||||||||||||    
T  15536821 ttagggttccggcacggtggcgccgccgcaccggctggccaaccgccgccggaacccc 15536764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 5650904 - 5650848
Alignment:
Q  230 tagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    ||||||||||||||||| | |||||||||| ||||||||| | ||||||||||||||    
T  5650904 tagggttccggcgcggtagcgccgccgcaccggccggccagccgccgccggaacccc 5650848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 15924257 - 15924312
Alignment:
Q  231 agggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    ||||||||||| |||||| |||||||||| ||||||||| | ||||||||||||||    
T  15924257 agggttccggcacggtggcgccgccgcaccggccggccagccgccgccggaacccc 15924312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 15609622 - 15609565
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    ||||||||||||| |||||| |||||||||| ||||||||| | ||| ||||||||||    
T  15609622 ttagggttccggcacggtggcgccgccgcaccggccggccagccgccaccggaacccc 15609565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 378 - 485
Target Start/End: Complemental strand, 10602 - 10495
Alignment:
Q  378 tgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgatcc 477  Q
    ||||||||||| ||||||||||| |||| |||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| |||||||||     
T  10602 tgtgaactacaacctatatataggcctctttgatcccatacgcgtgggtgtacggccttaccatgcacccatgcacccttgtcctttgaatctttgatct 10503  T
Q  478 tgtggtct 485  Q
    ||||||||    
T  10502 tgtggtct 10495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 169 - 298
Target Start/End: Complemental strand, 10816 - 10685
Alignment:
Q  169 agaatcgagtagaggagaaaagaacaagtagaaggaaccnnnnnnnnt--aaatataagttgttagggttccggcgcggtggtgccgccgcactggccgg 266  Q
    ||||||||||| ||||| ||||||||||||||| |||||        |  ||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  10816 agaatcgagtataggaggaaagaacaagtagaaagaaccaaaaaaatttaaaaaataagttgttagggttccggcgcggtggtgccgccgcactggcagg 10717  T
Q  267 ccaactgccgccggaaccccatcctttccatc 298  Q
    ||||| ||||||||||||||||||||||||||    
T  10716 ccaaccgccgccggaaccccatcctttccatc 10685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 169 - 294
Target Start/End: Original strand, 4557 - 4685
Alignment:
Q  169 agaatcgagtagaggagaaaagaacaagtagaaggaaccnnnnnnnntaaata---taagttgttagggttccggcgcggtggtgccgccgcactggccg 265  Q
    |||||||||||||||||||||||||||||||||||||||         ||| |   ||||||||||||| |||||||||||||||||||||| |||||||    
T  4557 agaatcgagtagaggagaaaagaacaagtagaaggaaccaaaaaaaaaaaaaaaaataagttgttagggctccggcgcggtggtgccgccgcgctggccg 4656  T
Q  266 gccaactgccgccggaaccccatcctttc 294  Q
    |||||||||||||||||||||||||||||    
T  4657 gccaactgccgccggaaccccatcctttc 4685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 376 - 485
Target Start/End: Complemental strand, 29705 - 29596
Alignment:
Q  376 tctgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgat 475  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |||| ||||| | ||||||||||| |||||||||| |||||||    
T  29705 tctgtgaactacagcctatatataggcctctttgatcccatacgcgtgggtgtacggccttgccatggatccacgcaccctggtcctttgatcctttgat 29606  T
Q  476 cctgtggtct 485  Q
    ||||||||||    
T  29605 cctgtggtct 29596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 286
Target Start/End: Complemental strand, 29850 - 29795
Alignment:
Q  231 agggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    ||||||||||| ||| || |||||||||| ||||||||| | ||||||||||||||    
T  29850 agggttccggcacggcggcgccgccgcaccggccggccagccgccgccggaacccc 29795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0503 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 1336 - 1256
Alignment:
Q  86 cacagaaccgtcgccaaccacaactacaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 166  Q
    |||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  1336 cacagaaccgtcaccaaccacaactacaacacatccgttgccgtcacaaacaacagcaaacaaccgggttcatccaaaggt 1256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0503; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 5903 - 5823
Alignment:
Q  86 cacagaaccgtcgccaaccacaactacaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 166  Q
    |||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  5903 cacagaaccgtcaccaaccacaactacaacacatccgttgccgtcacaaacaacagcaaacaaccgggttcatccaaaggt 5823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 1550 - 1626
Alignment:
Q  86 cacagaaccgtcgccaaccacaactacaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaa 162  Q
    |||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  1550 cacagaaccgtcaccaaccacaactacaacacatccgttgccgtcacaaacaacagcaaacaaccgggttcatccaa 1626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 1760 - 1812
Alignment:
Q  233 ggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    |||||||||| ||||  ||||||| || ||||||||||||||||||||||||||    
T  1760 ggttccggcgtggtgc-gccgccgtaccggccggccaactgccgccggaacccc 1812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 99854 - 99930
Alignment:
Q  86 cacagaaccgtcgccaaccacaactacaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaa 162  Q
    |||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  99854 cacagaaccgtcaccaaccacaactacaacacatccgttgccgtcacaaacaacagcaaacaaccgggttcatccaa 99930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 21049 - 21116
Alignment:
Q  217 aaatataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    |||||||||||  ||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  21049 aaatataagtt--tagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 21116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 34790 - 34857
Alignment:
Q  217 aaatataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    |||||||||||  ||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  34790 aaatataagtt--tagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 34857  T

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Target: scaffold0029; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 100064 - 100116
Alignment:
Q  233 ggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    |||||||||| ||||  ||||||| || ||||||||||||||||||||||||||    
T  100064 ggttccggcgtggtgc-gccgccgtaccggccggccaactgccgccggaacccc 100116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 323 - 403
Alignment:
Q  86 cacagaaccgtcgccaaccacaactacaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 166  Q
    |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||    
T  323 cacagagccgtcaccaaccacaactacaacacatctgttgccgtcacaaacaacagcaaacaaccaagttcatccaaaggt 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 24487357 - 24487277
Alignment:
Q  86 cacagaaccgtcgccaaccacaactacaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 166  Q
    |||||||||||| ||||||||||| |||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||    
T  24487357 cacagaaccgtcaccaaccacaaccacaacacatccgttgccgtcacaaacaacaacaaacaaccgggttcatccaaaggt 24487277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 15708054 - 15708123
Alignment:
Q  221 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccccatcc 290  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||    
T  15708054 ataagctgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaaccccatcc 15708123  T

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Target: scaffold0755 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 1794 - 1859
Alignment:
Q  221 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  1794 ataagttgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 1859  T

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Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 15684594 - 15684651
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15684594 ttagggttccggcgcggtggtgccgccgcactggccggccaaccgccgccggaacccc 15684651  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 42630410 - 42630345
Alignment:
Q  221 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  42630410 ataagttgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 42630345  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 8810913 - 8810978
Alignment:
Q  221 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  8810913 ataagctgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 8810978  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 8818727 - 8818792
Alignment:
Q  221 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  8818727 ataagctgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 8818792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 9461436 - 9461501
Alignment:
Q  221 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  9461436 ataagctgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 9461501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 9475194 - 9475259
Alignment:
Q  221 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  9475194 ataagctgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 9475259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 16387631 - 16387566
Alignment:
Q  221 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  16387631 ataagctgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 16387566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 16401758 - 16401693
Alignment:
Q  221 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  16401758 ataagctgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 16401693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 42017187 - 42017132
Alignment:
Q  111 acaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 166  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  42017187 acaacacatctgttgccgtcacaaacaacagcaagcaaccgggttcatccaaaggt 42017132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 30364178 - 30364113
Alignment:
Q  221 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    ||||| |||||||||||||||||||||| |||||||| |||||||||||||  |||||||||||||    
T  30364178 ataagctgttagggttccggcgcggtggcgccgccgcgctggccggccaaccaccgccggaacccc 30364113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 30378243 - 30378178
Alignment:
Q  221 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    ||||| |||||||||||||||||||||| |||||||| |||||||||||||  |||||||||||||    
T  30378243 ataagctgttagggttccggcgcggtggcgccgccgcgctggccggccaaccaccgccggaacccc 30378178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 36899197 - 36899235
Alignment:
Q  169 agaatcgagtagaggagaaaagaacaagtagaaggaacc 207  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  36899197 agaatcgagtagaggagaagagaacaagtagaaagaacc 36899235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 43737 - 43672
Alignment:
Q  221 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    |||| ||| |||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||    
T  43737 ataaattgatagggttccgacgcggtggtgccgccgcaccggccggccaaccgccgccggaacccc 43672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1575 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold1575
Description:

Target: scaffold1575; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 917 - 984
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaa-ccccatcctttcc 295  Q
    |||||||||||||| ||||| ||||||||||||||||||||||  ||||||||| |||||||||||||    
T  917 ttagggttccggcgtggtggcgccgccgcactggccggccaaccaccgccggaacccccatcctttcc 984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 4269 - 4215
Alignment:
Q  231 agggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 285  Q
    |||||||||||||||||| |||||||||| ||||||||||| |||||||||||||    
T  4269 agggttccggcgcggtggcgccgccgcaccggccggccaaccgccgccggaaccc 4215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1271 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold1271
Description:

Target: scaffold1271; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 1075 - 1019
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 285  Q
    ||||||||||||| ||||||||||||||||| |||||||||||  ||||||||||||    
T  1075 ttagggttccggcacggtggtgccgccgcaccggccggccaacctccgccggaaccc 1019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 13784 - 13731
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaa 282  Q
    |||||||||||||| ||||| |||||||||| ||||||||||| ||||||||||    
T  13784 ttagggttccggcgtggtggcgccgccgcaccggccggccaaccgccgccggaa 13731  T

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Target: scaffold0182 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 6156 - 6222
Alignment:
Q  217 aaatataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 285  Q
    |||||||||||  |||||||| ||| |||||| |||||||||| ||||||||||| |||||||||||||    
T  6156 aaatataagtt--tagggttctggcacggtggcgccgccgcaccggccggccaaccgccgccggaaccc 6222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 7619 - 7563
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 285  Q
    |||||||||||||| ||||||||||||| || || |||||||| |||||||||||||    
T  7619 ttagggttccggcgtggtggtgccgccgtaccggtcggccaaccgccgccggaaccc 7563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 118701 - 118645
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 285  Q
    |||||||||||||||||||||||||||| || ||||||||||| |||| | ||||||    
T  118701 ttagggttccggcgcggtggtgccgccgtaccggccggccaaccgccgtcagaaccc 118645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1855 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1855
Description:

Target: scaffold1855; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 261 - 327
Alignment:
Q  217 aaatataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 285  Q
    |||||||||||  || ||||||||| |||||| |||||||||| ||||||||||| | |||||||||||    
T  261 aaatataagtt--taaggttccggcacggtggcgccgccgcaccggccggccaaccgtcgccggaaccc 327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 3866 - 3809
Alignment:
Q  229 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 286  Q
    ||||||||||||||||| |||||||||| || ||||||||| | ||| ||||||||||    
T  3866 ttagggttccggcgcggaggtgccgccgtaccggccggccagccgccaccggaacccc 3809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 15976 - 15923
Alignment:
Q  111 acaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 166  Q
    |||||||||| || |||||| ||||||||||||  |||||||||||||||||||||    
T  15976 acaacacatccgtggccgtcacaaacaacagca--caaccgggttcatccaaaggt 15923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 15771 - 15735
Alignment:
Q  250 gccgccgcactggccggccaactgccgccggaacccc 286  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  15771 gccgccgcaccggccggccaaccgccgccggaacccc 15735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1761 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1761
Description:

Target: scaffold1761; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 629 - 574
Alignment:
Q  230 tagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 285  Q
    |||||||||| |||||||| |||||||||| || ||||||||  ||||||||||||    
T  629 tagggttccgacgcggtggcgccgccgcaccggtcggccaaccaccgccggaaccc 574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0422 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 5723 - 5671
Alignment:
Q  233 ggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 285  Q
    ||||||| ||||| |||||||| |||| ||||||||||| |||||| ||||||    
T  5723 ggttccgacgcggcggtgccgctgcaccggccggccaaccgccgccagaaccc 5671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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