View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1306_low_11 (Length: 484)
Name: NF1306_low_11
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1306_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 11 - 456
Target Start/End: Original strand, 39875166 - 39875611
Alignment:
| Q |
11 |
cagagatatcttcaaagttggaattttcccatgcatgaaaataccagtcagatctagctgcacttggaaaccaacataaacattggctcggttaatggtt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39875166 |
cagagatatcttcaaagttggaattttcccatgcatgaaaataccagtcagatctagctgcacttggaaaccaacataaacattggctcggttaatggtt |
39875265 |
T |
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| Q |
111 |
ggtgaccaccacagtgtaaatctacggttgggtatctggttgagaccagatctctgtgcattggtgagcttcttatacttcatagattcctcgaaacctg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39875266 |
ggtgaccaccacagtgtaaatctacggttgggtatctggttgagaccagatctctgtgcattggtgagcttcttatacttcatagattcctcgaaacctg |
39875365 |
T |
|
| Q |
211 |
atgccttttcccagaatagaccttcccaagttggaaaactgtgaaaattaaaaataggaggaggattaatcttcttccatagtggagataaattaacaag |
310 |
Q |
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| T |
39875366 |
atgccttttcccagaatagaccttcccaagttggaaaactgtgaaaattaaaaataggaggaggattaatcttcttccatagtggagataaattaacaag |
39875465 |
T |
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| Q |
311 |
ttggacatgctgcaagtagatttacaattcctagaccttccaccaaatatgatgtcagggaaaagtctggcccgtgacgtaagacagacggaccatttta |
410 |
Q |
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| T |
39875466 |
ttggacatgctgcaagtagatttacaattcctagaccttccaccaaatatgatgtcagggaaaagtctggcccgtgacgtaagacagacggaccatttta |
39875565 |
T |
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| Q |
411 |
gtgatgtgttctgtgtttgaattgtgtccaacaagacatgtcaact |
456 |
Q |
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| T |
39875566 |
gtgatgtgttctgtgtttgaattgtgtccaacaagacatgtcaact |
39875611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 12 - 456
Target Start/End: Original strand, 44778315 - 44778762
Alignment:
| Q |
12 |
agagatatcttcaaagttggaattttcccatgcatgaaaataccagtcagatctagctgcacttggaaaccaacataaacattggctcggttaatggttg |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44778315 |
agagatatcttcaaagttggaattttcccatgcatgaaaataccagtcagatcaagttgcacttggaaaccaacataaacattggctcggttaatggttg |
44778414 |
T |
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| Q |
112 |
gtgaccaccacagtgtaaatctacggttgggtatctggttgagaccagatctctgtgcattggtgagcttcttatacttcatagattcctcgaaacctga |
211 |
Q |
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| T |
44778415 |
gtgaccaccacagtgtaaatctacggttgggtatctggttgagaccagatctctgtgcattggtgagcttcttatacttcatagattcctcaaaacctga |
44778514 |
T |
|
| Q |
212 |
tgccttttcccagaatagaccttcccaagttggaaaactgtgaaaattaaaaataggaggaggattaatcttcttccatagtggagataaattaacaag- |
310 |
Q |
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| T |
44778515 |
tgccttttcccagaagagaccctcccaagttggaaaactgtgaaaaataaaaataagaggaggattactcttcttccaaagtggagataaattaacaagt |
44778614 |
T |
|
| Q |
311 |
-----ttggacatgctgcaagtagatttacaattcctagaccttccaccaaatatgatgtcagggaaaagtctggcccgtgacgtaagacagacggacca |
405 |
Q |
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| T |
44778615 |
aaatattggacatgctgcaagtatatttacaatgcctagaccttgtgccaaataggatgttagggaaaagtctggtccgtgacttaagacagacggacca |
44778714 |
T |
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| Q |
406 |
ttttagtgatgtgttctgtgtttgaattgtgtccaacaagacatgtcaact |
456 |
Q |
| |
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|||||| | |||||||||||||||||||||||| ||||||||||||||| |
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| T |
44778715 |
ttttagggctgtgttctgtgtttgaattgtgtc---caagacatgtcaact |
44778762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 2899674 - 2899438
Alignment:
| Q |
12 |
agagatatcttcaaagttggaattttcccatgcatgaaaataccagtcagatctagctgcacttggaaaccaacataaacattggctcggttaatggttg |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2899674 |
agagatatcttcaaagttggaattttcccatgcatgaaaataccagtcagatctagctgcacctggaaaccaacataaacattggctcggttaatggttg |
2899575 |
T |
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| Q |
112 |
gtgaccaccacagtgtaaatctacggttgggtatctggttgagaccagatctctgtgcattggtgagcttcttatacttcatagattcctcgaaacctga |
211 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2899574 |
gtgaccaccaaagcgtaaatctacggttgggtatctggttgagaccagatctttgtgcattggtgagcttcttatacttcatagattcctcaaaacctga |
2899475 |
T |
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| Q |
212 |
tgccttttcccagaatagaccttcccaagttggaaaa |
248 |
Q |
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| T |
2899474 |
tgctttttcccagaagagaccttcccaagttggaaaa |
2899438 |
T |
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