View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1306_low_16 (Length: 402)
Name: NF1306_low_16
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1306_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 7 - 392
Target Start/End: Original strand, 44622353 - 44622731
Alignment:
| Q |
7 |
ataatatcctgtgagattggacataaaatacaactgatatcaaacagcaaaaatgacaatcttaggttcatcacgagctaaaggaatagcgggataaaaa |
106 |
Q |
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| T |
44622353 |
ataatatcctgtgagattggacataaaatgcaactgatatcaaacagcaaaaatgacaatcttaggttcatcacgagctaaaggaatagcggtataaaaa |
44622452 |
T |
|
| Q |
107 |
agcagtgttgtcaatcgcatattatgtaaaatagaagcttgttcaaattctgctatgctacaatgatatagctgctgtttggcaacagtttgtactagat |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
44622453 |
agcagtgttgtcaatcgcatattatgtaaaatagaagcttgttcaaattctgctatgctacaatgctatagctgctgtttggtaacagtttgtactagat |
44622552 |
T |
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| Q |
207 |
catattacgcataaataatagcaattttttaatatttcaatacactatagcactatagcgccactatttgacaacactgtnnnnnnntacagttcaaatg |
306 |
Q |
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| T |
44622553 |
catattacgcataaataatagcaattttttaatatttcaatacactaaagcactatagcgccactatttgacaacactgt-aaaaaatacagttcaaatg |
44622651 |
T |
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| Q |
307 |
tagagtatgtaaaagctaaagctagagtattaccgggtctgcaaaaaggttaaataaaaaaggttgcacatcttctagagtctctg |
392 |
Q |
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| T |
44622652 |
tagagtatgta------aaagctagagtattaccgggtctgcaaaaaggttaaataaaaaaggttgcacatcttctagagtctctg |
44622731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 392
Target Start/End: Original strand, 39877943 - 39878010
Alignment:
| Q |
325 |
aagctagagtattaccgggtctgcaaaaaggttaaataaaaaaggttgcacatcttctagagtctctg |
392 |
Q |
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| T |
39877943 |
aagctagagtattactggatcggcaaaaaggttaaataaaaaaggctgcacatcatctagagtctctg |
39878010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 34925253 - 34925343
Alignment:
| Q |
113 |
gttgtcaatcgcatattatgtaaaatagaagcttgttcaaattctgctatgctacaatgatatagctgctgtttggcaacagtttgtacta |
203 |
Q |
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| T |
34925253 |
gttgtcaattgcagatcgtggaaaatagcagtttgttcaaattctgctatgctacaatgctatagccgctatttgacaacattttgtacta |
34925343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 8558804 - 8558849
Alignment:
| Q |
134 |
aaaatagaagcttgttcaaattctgctatgctacaatgatatagct |
179 |
Q |
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| T |
8558804 |
aaaatagtagtttgttcaaattccgctatgctacaatgttatagct |
8558849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 392
Target Start/End: Original strand, 24035976 - 24036067
Alignment:
| Q |
295 |
acagttcaaatgtagagtatgtaaaagctaaagctagagtattaccgggtctgcaaaaaggttaaataaaaaaggttgcacatcttctagagtctctg |
392 |
Q |
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|||||||||||||||| ||||| ||| |||||||||||||| |||| ||||||||| |||||| |||| || |||||||||||||||||||| |
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| T |
24035976 |
acagttcaaatgtagaatatgt------taatgctagagtattaccaggtcagcaaaaagggtaaatagaaaatatttcacatcttctagagtctctg |
24036067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 38434252 - 38434183
Alignment:
| Q |
109 |
cagtgttgtcaatcgcatattatgtaaaatagaagcttgttcaaattctgctatgctacaatgatatagc |
178 |
Q |
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||||||||||||||||| | | | ||||||| || ||||||||||||||||||| |||| || |||||| |
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| T |
38434252 |
cagtgttgtcaatcgcagaacacggaaaatagcagtttgttcaaattctgctatgttacagtgctatagc |
38434183 |
T |
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