View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1306_low_17 (Length: 400)

Name: NF1306_low_17
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1306_low_17
NF1306_low_17
[»] chr3 (9 HSPs)
chr3 (147-371)||(33454866-33455090)
chr3 (146-193)||(33968180-33968227)
chr3 (147-194)||(45297549-45297596)
chr3 (208-257)||(44868068-44868117)
chr3 (208-257)||(47737649-47737698)
chr3 (208-257)||(50675101-50675150)
chr3 (146-194)||(8653721-8653769)
chr3 (147-183)||(31598149-31598185)
chr3 (147-183)||(33455793-33455829)
[»] chr7 (11 HSPs)
chr7 (147-371)||(29060008-29060232)
chr7 (146-194)||(36846844-36846892)
chr7 (153-193)||(40740666-40740706)
chr7 (147-194)||(29060740-29060787)
chr7 (147-194)||(36844612-36844659)
chr7 (147-194)||(42607081-42607128)
chr7 (147-188)||(6730164-6730205)
chr7 (208-257)||(27855626-27855675)
chr7 (147-188)||(40320417-40320458)
chr7 (146-194)||(12732246-12732294)
chr7 (147-187)||(42607820-42607860)
[»] chr1 (5 HSPs)
chr1 (147-371)||(48834366-48834590)
chr1 (147-193)||(2687729-2687775)
chr1 (152-194)||(2684856-2684898)
chr1 (147-188)||(34716424-34716465)
chr1 (147-183)||(41884241-41884277)
[»] chr4 (15 HSPs)
chr4 (20-146)||(32078536-32078664)
chr4 (147-194)||(33370876-33370923)
chr4 (147-194)||(34154794-34154841)
chr4 (208-257)||(37567450-37567499)
chr4 (147-188)||(38009284-38009325)
chr4 (147-188)||(54453095-54453136)
chr4 (146-194)||(232050-232098)
chr4 (146-194)||(17512207-17512255)
chr4 (146-194)||(25970105-25970153)
chr4 (220-268)||(35428086-35428134)
chr4 (146-194)||(38010849-38010897)
chr4 (138-194)||(47326790-47326846)
chr4 (147-183)||(47335692-47335728)
chr4 (138-194)||(47341586-47341642)
chr4 (154-194)||(55514355-55514395)
[»] chr8 (8 HSPs)
chr8 (147-194)||(35839722-35839769)
chr8 (147-183)||(35943851-35943887)
chr8 (147-183)||(37562295-37562331)
chr8 (147-194)||(42346106-42346153)
chr8 (208-257)||(7818535-7818584)
chr8 (147-188)||(35943076-35943117)
chr8 (208-257)||(39852215-39852264)
chr8 (147-183)||(35840542-35840578)
[»] chr5 (4 HSPs)
chr5 (147-194)||(4554657-4554704)
chr5 (144-194)||(6007655-6007705)
chr5 (147-183)||(26711568-26711604)
chr5 (147-183)||(26981305-26981341)
[»] chr2 (5 HSPs)
chr2 (147-194)||(34617653-34617700)
chr2 (147-194)||(36390957-36391004)
chr2 (208-257)||(10883348-10883397)
chr2 (146-183)||(44094829-44094866)
chr2 (154-194)||(5005469-5005509)
[»] chr6 (5 HSPs)
chr6 (147-194)||(34035045-34035092)
chr6 (208-257)||(13936616-13936665)
chr6 (147-188)||(16764925-16764966)
chr6 (147-188)||(28975340-28975381)
chr6 (147-183)||(25067862-25067898)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 6e-93; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 147 - 371
Target Start/End: Original strand, 33454866 - 33455090
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaagnnnnnnnnaacggttagattaagtaaagaacacattgttatcatgcaccctc 246  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||        |||||||||||||||||||||||||||||||||||||||| |||    
T  33454866 ggtggggtttagcatgggaaaggaaaattgtttcccaccatgagaaagttttttttaacggttagattaagtaaagaacacattgttatcatgcactctc 33454965  T
Q  247 aacactagattacttttttctttccctttcaccattgtcttcaacccagggttttggaattttacactcactttcaatgaagaacaacaacatgaaacca 346  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  33454966 aacactatattacttttttctttccctttcaccattgtcttcaacccacggttttggaattttactctcaatttcaatgaagaacaacaacatgaaacca 33455065  T
Q  347 caacaagaacaacatgagtgttatc 371  Q
    |||||||||||||||||||| ||||    
T  33455066 caacaagaacaacatgagtgctatc 33455090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 33968180 - 33968227
Alignment:
Q  146 tggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaa 193  Q
    |||||||||||||||||||||||| || |||||||||| |||| ||||    
T  33968180 tggtggggtttagcatgggaaagggaacttgtttcccaccatgggaaa 33968227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 45297549 - 45297596
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    |||||||||||| ||||||||||| | ||||||||||||||| |||||    
T  45297549 ggtggggtttagtatgggaaaggagagttgtttcccatcatgggaaag 45297596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 44868068 - 44868117
Alignment:
Q  208 ttagattaagtaaagaacacattgttatcatgcaccctcaacactagatt 257  Q
    ||||||||||||||||||| ||| ||| ||||| | ||||||||||||||    
T  44868068 ttagattaagtaaagaacatattcttaacatgctctctcaacactagatt 44868117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 47737698 - 47737649
Alignment:
Q  208 ttagattaagtaaagaacacattgttatcatgcaccctcaacactagatt 257  Q
    ||||||||||| ||||||| ||| ||||||||| | ||||||||||||||    
T  47737698 ttagattaagtgaagaacatattcttatcatgctctctcaacactagatt 47737649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 50675150 - 50675101
Alignment:
Q  208 ttagattaagtaaagaacacattgttatcatgcaccctcaacactagatt 257  Q
    ||||||||||| ||||||| ||| ||| ||||||| ||||||||||||||    
T  50675150 ttagattaagtgaagaacatattattaacatgcactctcaacactagatt 50675101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 8653769 - 8653721
Alignment:
Q  146 tggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    |||||||||||||||||| |||||   ||||||||||| ||||||||||    
T  8653769 tggtggggtttagcatggaaaagggggattgtttcccaccatgagaaag 8653721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 31598149 - 31598185
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttccca 183  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  31598149 ggtggggtttagcatgggaaagaaaagttgtttccca 31598185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 33455829 - 33455793
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttccca 183  Q
    |||||||||||||||||||||||  ||||||||||||    
T  33455829 ggtggggtttagcatgggaaaggggaattgtttccca 33455793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 147 - 371
Target Start/End: Original strand, 29060008 - 29060232
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaagnnnnnnnnaacggttagattaagtaaagaacacattgttatcatgcaccctc 246  Q
    ||||||||||||||||||||||||||||||||| |||  || ||||||        ||| |||| ||||||||||||||| ||| ||||||||||| |||    
T  29060008 ggtggggtttagcatgggaaaggaaaattgttttccacgataagaaagttttttttaacagttaaattaagtaaagaacatattattatcatgcactctc 29060107  T
Q  247 aacactagattacttttttctttccctttcaccattgtcttcaacccagggttttggaattttacactcactttcaatgaagaacaacaacatgaaacca 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29060108 aacactagattacttttttctttccctttcaccattgtcttcaacccacggttttggaattttacactcactttcaatgaagaacaacaacatgaaacca 29060207  T
Q  347 caacaagaacaacatgagtgttatc 371  Q
    |||||||||||||||||||| ||||    
T  29060208 caacaagaacaacatgagtgctatc 29060232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 36846892 - 36846844
Alignment:
Q  146 tggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    |||||||||||| ||| |||||||||| || ||||||||||||||||||    
T  36846892 tggtggggtttaacataggaaaggaaagttttttcccatcatgagaaag 36846844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 40740666 - 40740706
Alignment:
Q  153 gtttagcatgggaaaggaaaattgtttcccatcatgagaaa 193  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  40740666 gtttagcatgggaaaggaaaattgtttcccatgatgggaaa 40740706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 29060787 - 29060740
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    |||||||||||||||||||||||  |||||||||||| |||| |||||    
T  29060787 ggtggggtttagcatgggaaaggggaattgtttcccaccatgggaaag 29060740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 36844612 - 36844659
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    |||||||||||||||||||||||  | |||||||||| ||||||||||    
T  36844612 ggtggggtttagcatgggaaaggtgagttgtttcccaccatgagaaag 36844659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 42607081 - 42607128
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    |||||||||||||||||||||||  |||||||||||| |||| |||||    
T  42607081 ggtggggtttagcatgggaaaggggaattgtttcccaccatgggaaag 42607128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 6730205 - 6730164
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatg 188  Q
    ||||||||||||||||||||||| || |||||||||| ||||    
T  6730205 ggtggggtttagcatgggaaagggaagttgtttcccaccatg 6730164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 27855626 - 27855675
Alignment:
Q  208 ttagattaagtaaagaacacattgttatcatgcaccctcaacactagatt 257  Q
    ||||||||||| ||||||| ||| ||||||||| | ||||||||||||||    
T  27855626 ttagattaagtgaagaacatattcttatcatgctctctcaacactagatt 27855675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 40320458 - 40320417
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatg 188  Q
    |||||||||||||||||||||||| | |||||||||| ||||    
T  40320458 ggtggggtttagcatgggaaaggagagttgtttcccaccatg 40320417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 12732246 - 12732294
Alignment:
Q  146 tggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    |||||||||||||||||||||||| |||  |||||||| |||| |||||    
T  12732246 tggtggggtttagcatgggaaagggaaagagtttcccaccatgggaaag 12732294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 42607860 - 42607820
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcat 187  Q
    ||||||||||||||||| |||||  ||||||||||||||||    
T  42607860 ggtggggtttagcatggaaaaggggaattgtttcccatcat 42607820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 147 - 371
Target Start/End: Original strand, 48834366 - 48834590
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaagnnnnnnnnaacggttagattaagtaaagaacacattgttatcatgcaccctc 246  Q
    |||||||||||||||||||||| |||||||||| ||| ||| ||||||        ||| |||||||||||||||||||| ||| ||||||||||| ||     
T  48834366 ggtggggtttagcatgggaaagaaaaattgttttccaccataagaaagttttttttaacagttagattaagtaaagaacatattattatcatgcactctg 48834465  T
Q  247 aacactagattacttttttctttccctttcaccattgtcttcaacccagggttttggaattttacactcactttcaatgaagaacaacaacatgaaacca 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48834466 aacactagattacttttttctttccctttcaccattgtcttcaacccacggttttggaattttacactcactttcaatgaagaacaacaacatgaaacca 48834565  T
Q  347 caacaagaacaacatgagtgttatc 371  Q
    |||||||||||||||||||| ||||    
T  48834566 caacaagaacaacatgagtgctatc 48834590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 2687775 - 2687729
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaa 193  Q
    |||||||||||||||||||||||| |||||||||||| |||| ||||    
T  2687775 ggtggggtttagcatgggaaaggataattgtttcccaccatgggaaa 2687729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 2684856 - 2684898
Alignment:
Q  152 ggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    ||||||||||||||||||| | |||||| ||||||||||||||    
T  2684856 ggtttagcatgggaaaggatatttgttttccatcatgagaaag 2684898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 34716424 - 34716465
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatg 188  Q
    |||||||||||||||||||| ||| | |||||||||||||||    
T  34716424 ggtggggtttagcatgggaatggagagttgtttcccatcatg 34716465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 41884277 - 41884241
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttccca 183  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  41884277 ggtggggtttagcatggaaaagggaaattgtttccca 41884241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 32078536 - 32078664
Alignment:
Q  20 aagagcggattgttacaaagttcatatatttcgtggaagttaacggtgacaa--tgcacaatgtctttgaaaacataaacgaagaacaatttttaatgcg 117  Q
    ||||| ||||||||| |||||||||||||||||||||||||||  ||| |||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  32078536 aagagaggattgttagaaagttcatatatttcgtggaagttaatagtggcaaaatgcacaatgtctttgaaaacataaacgaagaacaatttttaatgcg 32078635  T
Q  118 gaaaagtgaatgatttacgtgtaaaatgt 146  Q
    ||||| | |||||||||||||||||||||    
T  32078636 gaaaattaaatgatttacgtgtaaaatgt 32078664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 33370923 - 33370876
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    |||||||||||||||||||||||| | |||||||||| |||| |||||    
T  33370923 ggtggggtttagcatgggaaaggatacttgtttcccaccatgggaaag 33370876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 34154794 - 34154841
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    ||||||||||||||||||||| |||| |||||||||| |||| |||||    
T  34154794 ggtggggtttagcatgggaaaagaaacttgtttcccaccatgggaaag 34154841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 37567499 - 37567450
Alignment:
Q  208 ttagattaagtaaagaacacattgttatcatgcaccctcaacactagatt 257  Q
    ||||||||||||||||||| ||| ||| ||||| | ||||||||||||||    
T  37567499 ttagattaagtaaagaacatattcttaacatgctctctcaacactagatt 37567450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 38009284 - 38009325
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatg 188  Q
    |||||| ||||||||||||||||| |||||||||||| ||||    
T  38009284 ggtgggatttagcatgggaaaggataattgtttcccaccatg 38009325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 54453095 - 54453136
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatg 188  Q
    |||||||||||||||||||| || || |||||||||||||||    
T  54453095 ggtggggtttagcatgggaatgggaagttgtttcccatcatg 54453136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 232098 - 232050
Alignment:
Q  146 tggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    ||||||||||||| |||||||||| || |||||||||| |||| |||||    
T  232098 tggtggggtttagtatgggaaagggaagttgtttcccaccatgggaaag 232050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 17512255 - 17512207
Alignment:
Q  146 tggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    ||||||||||||||||| ||| ||| | ||||||||||||||| |||||    
T  17512255 tggtggggtttagcatgagaatggatagttgtttcccatcatgggaaag 17512207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 25970105 - 25970153
Alignment:
Q  146 tggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    ||||||||||||||||||||||||  | |||||||||| |||| |||||    
T  25970105 tggtggggtttagcatgggaaaggggagttgtttcccaccatgggaaag 25970153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 35428134 - 35428086
Alignment:
Q  220 aagaacacattgttatcatgcaccctcaacactagattacttttttctt 268  Q
    ||||||||||| ||||||||| |||||||||||| |||| |||| ||||    
T  35428134 aagaacacatttttatcatgctccctcaacactaaattatttttctctt 35428086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 38010897 - 38010849
Alignment:
Q  146 tggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    ||||| ||||||||||||||||||| | |||||| |||||||| |||||    
T  38010897 tggtgaggtttagcatgggaaaggatatttgttttccatcatgggaaag 38010849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 47326846 - 47326790
Alignment:
Q  138 gtaaaatgtggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    ||||| || ||||| || ||||||||||||||||| |||||||||| |||| |||||    
T  47326846 gtaaattggggtggagtatagcatgggaaaggaaagttgtttcccaccatgggaaag 47326790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 47335692 - 47335728
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttccca 183  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  47335692 ggtggggtttagcatgggaaagaaaaattgattccca 47335728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 47341642 - 47341586
Alignment:
Q  138 gtaaaatgtggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    ||||| || ||||| || ||||||||||||||||| |||||||||| |||| |||||    
T  47341642 gtaaattggggtggagtatagcatgggaaaggaaagttgtttcccaccatgggaaag 47341586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 55514395 - 55514355
Alignment:
Q  154 tttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    ||||||||||||||||||| |||||||||| |||| |||||    
T  55514395 tttagcatgggaaaggaaagttgtttcccaccatgggaaag 55514355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 35839722 - 35839769
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    ||||||||||||||||||||||| || ||||||||||| |||||||||    
T  35839722 ggtggggtttagcatgggaaagggaagttgtttcccatgatgagaaag 35839769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 35943887 - 35943851
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttccca 183  Q
    |||||||||||||||||||||||| ||||||||||||    
T  35943887 ggtggggtttagcatgggaaaggagaattgtttccca 35943851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 37562295 - 37562331
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttccca 183  Q
    |||||||||||||||||||||||| ||||||||||||    
T  37562295 ggtggggtttagcatgggaaaggagaattgtttccca 37562331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 42346153 - 42346106
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    |||||||||||||||||||| ||| | ||||||||||||||| |||||    
T  42346153 ggtggggtttagcatgggaatggagagttgtttcccatcatgggaaag 42346106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 7818535 - 7818584
Alignment:
Q  208 ttagattaagtaaagaacacattgttatcatgcaccctcaacactagatt 257  Q
    ||||||||||| ||||||| ||| ||||||||| | ||||||||||||||    
T  7818535 ttagattaagtgaagaacatattcttatcatgctctctcaacactagatt 7818584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 35943076 - 35943117
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatg 188  Q
    ||||||||||||||||||||||| || |||||||||| ||||    
T  35943076 ggtggggtttagcatgggaaagggaagttgtttcccaccatg 35943117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 39852215 - 39852264
Alignment:
Q  208 ttagattaagtaaagaacacattgttatcatgcaccctcaacactagatt 257  Q
    ||||||||||| ||||||| ||| ||| ||||| ||||||||||||||||    
T  39852215 ttagattaagtgaagaacatattcttaacatgctccctcaacactagatt 39852264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 35840578 - 35840542
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttccca 183  Q
    ||||||||||||||||||||||| || ||||||||||    
T  35840578 ggtggggtttagcatgggaaagggaagttgtttccca 35840542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 4554657 - 4554704
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    |||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  4554657 ggtggggtttagtatgggaaaggaaaattgttttccaccatgagaaag 4554704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 6007705 - 6007655
Alignment:
Q  144 tgtggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    ||||||||||||||| |||||||||| || ||||||||||| ||| |||||    
T  6007705 tgtggtggggtttagaatgggaaagggaatttgtttcccatgatgggaaag 6007655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 26711568 - 26711604
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttccca 183  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  26711568 ggtggggtttagtatgggaaaggaaagttgtttccca 26711604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 26981305 - 26981341
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttccca 183  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  26981305 ggtggggtttagtatgggaaaggaaagttgtttccca 26981341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 34617653 - 34617700
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    |||||||||||||||||||||||| |||||||||||| |||| |||||    
T  34617653 ggtggggtttagcatgggaaaggataattgtttcccaccatgggaaag 34617700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 36390957 - 36391004
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    ||||||||||||||||||||||| || |||||||||| |||| |||||    
T  36390957 ggtggggtttagcatgggaaagggaagttgtttcccaccatgggaaag 36391004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 10883348 - 10883397
Alignment:
Q  208 ttagattaagtaaagaacacattgttatcatgcaccctcaacactagatt 257  Q
    ||||||||||||||||||| ||| ||| ||||| | ||||||||||||||    
T  10883348 ttagattaagtaaagaacatattcttaacatgctctctcaacactagatt 10883397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 44094866 - 44094829
Alignment:
Q  146 tggtggggtttagcatgggaaaggaaaattgtttccca 183  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  44094866 tggtgggatttagcatgggaaaggaaagttgtttccca 44094829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 5005469 - 5005509
Alignment:
Q  154 tttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    ||||||||||||||||  ||||||||||||||||| |||||    
T  5005469 tttagcatgggaaaggggaattgtttcccatcatgggaaag 5005509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 34035092 - 34035045
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatgagaaag 194  Q
    ||||| ||||| |||||||||||| ||||||||||||||||| |||||    
T  34035092 ggtggagtttaacatgggaaaggagaattgtttcccatcatgggaaag 34035045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 13936665 - 13936616
Alignment:
Q  208 ttagattaagtaaagaacacattgttatcatgcaccctcaacactagatt 257  Q
    ||||||||||||||||||| ||| ||| ||||| | ||||||||||||||    
T  13936665 ttagattaagtaaagaacatattcttaacatgctctctcaacactagatt 13936616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 16764925 - 16764966
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatg 188  Q
    ||||| |||||||||||||||||||| |||||||||| ||||    
T  16764925 ggtggagtttagcatgggaaaggaaagttgtttcccaccatg 16764966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 28975340 - 28975381
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttcccatcatg 188  Q
    |||||||||||||||||||||||| | |||||||| ||||||    
T  28975340 ggtggggtttagcatgggaaaggagagttgtttcctatcatg 28975381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 25067898 - 25067862
Alignment:
Q  147 ggtggggtttagcatgggaaaggaaaattgtttccca 183  Q
    |||||||||||||||||||||||| | ||||||||||    
T  25067898 ggtggggtttagcatgggaaaggatatttgtttccca 25067862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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