View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1306_low_18 (Length: 353)
Name: NF1306_low_18
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1306_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 1505121 - 1505293
Alignment:
| Q |
97 |
caccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggccaaggacttg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1505121 |
caccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttcgtttggccaaggacttg |
1505220 |
T |
|
| Q |
197 |
gctgagaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactgcagtcacatttcgcggcccta |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1505221 |
gctgagaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactgcagtcacatttcgcggcccta |
1505293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 97 - 258
Target Start/End: Original strand, 1478143 - 1478304
Alignment:
| Q |
97 |
caccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggccaaggacttg |
196 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1478143 |
caccaaactcttaggtcttcgtccatatgtgaagaggtatatgatgtaccaacaaggatgttttgcaggtgggacggtgcttcgtttggccaaggacttg |
1478242 |
T |
|
| Q |
197 |
gctgagaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactgcagtcacatt |
258 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| ||||| ||||| |||||||| ||||| |
|
|
| T |
1478243 |
gctgagaacaataaaggtgctcgtgtgttggttgtttgttctgaagttactgcagtgacatt |
1478304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 101 - 258
Target Start/End: Original strand, 1482341 - 1482498
Alignment:
| Q |
101 |
aaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggccaaggacttggctg |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1482341 |
aaactcttaggtcttcgtccatatgtgaagagatacatgatgtaccaacaaggatgctttgcaggtgggacggtgcttcgtttggccaaggacttggctg |
1482440 |
T |
|
| Q |
201 |
agaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactgcagtcacatt |
258 |
Q |
| |
|
|||| || |||||||| |||||||||||||| ||||| ||||| |||||||| ||||| |
|
|
| T |
1482441 |
agaataataaaggtgctcgtgtgttggttgtttgttctgaagttactgcagtgacatt |
1482498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 101 - 261
Target Start/End: Original strand, 1492316 - 1492476
Alignment:
| Q |
101 |
aaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggccaaggacttggctg |
200 |
Q |
| |
|
||||||||||||||||| |||||||| || || |||||||||||||||||||| |||||||||||||| ||||| ||| ||||||| ||||| ||||||| |
|
|
| T |
1492316 |
aaactcttaggtcttcgtccatatgtaaaaagatacatgatgtaccagcaaggttgttttgcaggtggcacggtacttcgtttggctaaggatttggctg |
1492415 |
T |
|
| Q |
201 |
agaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactgcagtcacatttcg |
261 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
1492416 |
agaacaacaaaggtgctcgtgtgttagttgtttgttctgaagtcactgcagtcacatttcg |
1492476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 1499388 - 1499546
Alignment:
| Q |
101 |
aaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggccaaggacttggctg |
200 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||| | ||| |||| ||||||||| || || ||| ||||||| |||||||| |||| |
|
|
| T |
1499388 |
aaactcttaggtcttaacccatatgtgaaaaggtacatgatgtaccaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctg |
1499487 |
T |
|
| Q |
201 |
agaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactgcagtcacattt |
259 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||||| ||| |||||||| || ||||| |
|
|
| T |
1499488 |
agaataacaaaggtgctcgtgtgttggttgtttgttctgaaatcactgcaatctcattt |
1499546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 1509269 - 1509439
Alignment:
| Q |
98 |
accaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggccaaggacttgg |
197 |
Q |
| |
|
|||||||| |||||||||| ||||||||| || ||||||||||||||||| ||| | |||||||||||||| || |||||| |||||| ||||| |||| |
|
|
| T |
1509269 |
accaaacttttaggtcttcacccatatgtaaaaaggtacatgatgtaccaacaaaggtgttttgcaggtggcactgtgcttcatttggcaaaggatttgg |
1509368 |
T |
|
| Q |
198 |
ctgagaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactgcagtcacatttcgcggccct |
268 |
Q |
| |
|
|||| || ||| ||| ||| |||||||||||||| ||||| |||||| ||||||||||||| | |||||| |
|
|
| T |
1509369 |
ctgaaaataaccaagatgctcgtgtgttggttgtttgttctaaagtcattgcagtcacattttgtggccct |
1509439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 101 - 247
Target Start/End: Original strand, 1486818 - 1486964
Alignment:
| Q |
101 |
aaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggccaaggacttggctg |
200 |
Q |
| |
|
||||||||||||||| |||| ||||||| |||| ||||| ||||| |||||||| |||||||| || || || || ||| ||||||||||||||||| |
|
|
| T |
1486818 |
aaactcttaggtctttgcccggatgtgaaacggtatatgatataccaacaaggatgctttgcagggggcactgttctacgttaggccaaggacttggctg |
1486917 |
T |
|
| Q |
201 |
agaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcact |
247 |
Q |
| |
|
||||||| |||| ||| | ||||||||| | ||||| ||||||||| |
|
|
| T |
1486918 |
agaacaataaagatgctcttgtgttggtaatatgttctgaagtcact |
1486964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 9e-55; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 5284452 - 5284624
Alignment:
| Q |
97 |
caccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggccaaggacttg |
196 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||| ||| |||||||||| || || |
|
|
| T |
5284452 |
caccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaacaagggtgttttgcaggtggtacggtacttcgtttggccaaagattta |
5284551 |
T |
|
| Q |
197 |
gctgagaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactgcagtcacatttcgcggcccta |
269 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||| |||||||| || ||||||||||| ||||||| |
|
|
| T |
5284552 |
gctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcaccgctgtcacatttcgtggcccta |
5284624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 5302640 - 5302812
Alignment:
| Q |
97 |
caccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggccaaggacttg |
196 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||| |||||||||| || | |
|
|
| T |
5302640 |
caccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatcta |
5302739 |
T |
|
| Q |
197 |
gctgagaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactgcagtcacatttcgcggcccta |
269 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||| ||||||| |
|
|
| T |
5302740 |
gctgagaacaacaaaggtgctcgtgtgttggttgtatgttcagaggtcaccgctgtcacatttcgtggcccta |
5302812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 101 - 269
Target Start/End: Complemental strand, 46706962 - 46706794
Alignment:
| Q |
101 |
aaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggccaaggacttggctg |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| ||||||||||| ||||| || |||||||| || |||| |||| ||||||| || || ||||||| |
|
|
| T |
46706962 |
aaactcttcggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggcacggggcttcgtttggctaacgatttggctg |
46706863 |
T |
|
| Q |
201 |
agaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactgcagtcacatttcgcggcccta |
269 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
46706862 |
agaacaacaaaggtgcccgtgtattggttgtttgttctgaagtcactgcagtcacattccgcggcccta |
46706794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 101 - 267
Target Start/End: Complemental strand, 5289671 - 5289505
Alignment:
| Q |
101 |
aaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggccaaggacttggctg |
200 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||||| |||||||||| || ||||||| |
|
|
| T |
5289671 |
aaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctg |
5289572 |
T |
|
| Q |
201 |
agaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactgcagtcacatttcgcggccc |
267 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||| |||||||| || |||||||| || ||||| |
|
|
| T |
5289571 |
agaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcaccgctgtcacattccgtggccc |
5289505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 101 - 267
Target Start/End: Original strand, 5310545 - 5310711
Alignment:
| Q |
101 |
aaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggccaaggacttggctg |
200 |
Q |
| |
|
|||||||| || ||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||||| |||||||||| || ||||||| |
|
|
| T |
5310545 |
aaactcttgggccttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctg |
5310644 |
T |
|
| Q |
201 |
agaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactgcagtcacatttcgcggccc |
267 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||| |||||||| || ||||||||||| ||||| |
|
|
| T |
5310645 |
agaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcaccgctgtcacatttcgtggccc |
5310711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 97 - 261
Target Start/End: Original strand, 5315255 - 5315419
Alignment:
| Q |
97 |
caccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggccaaggacttg |
196 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||| || ||||||||||| |||||||| ||||||| || || ||| |
|
|
| T |
5315255 |
caccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaagggtgctttgcaggtggcacggtgctccgtttggctaaagatttg |
5315354 |
T |
|
| Q |
197 |
gctgagaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactgcagtcacatttcg |
261 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||| |||||||| || ||||||||||| |
|
|
| T |
5315355 |
gctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcaccgctgtcacatttcg |
5315419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 101 - 269
Target Start/End: Original strand, 44128722 - 44128890
Alignment:
| Q |
101 |
aaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggccaaggacttggctg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| || |||||||| || ||||| ||| ||||||| || || || |||| |
|
|
| T |
44128722 |
aaactcttaggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctg |
44128821 |
T |
|
| Q |
201 |
agaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactgcagtcacatttcgcggcccta |
269 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44128822 |
aaaacaacaaaggtgctcgtgtgttggttgtctgttctgaagtcactgcagtcacatttcgcggcccta |
44128890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 101 - 269
Target Start/End: Original strand, 44132927 - 44133095
Alignment:
| Q |
101 |
aaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggccaaggacttggctg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| || |||||||| || ||||| ||| ||||||| || || || |||| |
|
|
| T |
44132927 |
aaactcttaggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctg |
44133026 |
T |
|
| Q |
201 |
agaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactgcagtcacatttcgcggcccta |
269 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44133027 |
aaaacaacaaaggtgctcgtgtgttggttgtctgttctgaagtcactgcagtcacatttcgcggcccta |
44133095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 101 - 269
Target Start/End: Original strand, 44141349 - 44141517
Alignment:
| Q |
101 |
aaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggccaaggacttggctg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| || |||||||| || ||||| ||| ||||||| || || || |||| |
|
|
| T |
44141349 |
aaactcttaggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctg |
44141448 |
T |
|
| Q |
201 |
agaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactgcagtcacatttcgcggcccta |
269 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44141449 |
aaaacaacaaaggtgctcgtgtgttggttgtctgttctgaagtcactgcagtcacatttcgcggcccta |
44141517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 101 - 259
Target Start/End: Complemental strand, 24163764 - 24163606
Alignment:
| Q |
101 |
aaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggccaaggacttggctg |
200 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||||| ||||||||||| ||||| |||||||||||||| ||||| ||| | ||||||||||||||||||| |
|
|
| T |
24163764 |
aaactcttaggtcttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctg |
24163665 |
T |
|
| Q |
201 |
agaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactgcagtcacattt |
259 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||| ||||| || ||| |||||||| |
|
|
| T |
24163664 |
agaacaacaaaggttctcgtgtgttggttgtttgttctgaagttaccgcaatcacattt |
24163606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 104 - 237
Target Start/End: Complemental strand, 37859335 - 37859202
Alignment:
| Q |
104 |
ctcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggccaaggacttggctgaga |
203 |
Q |
| |
|
||||| || ||||| |||||||||||| | |||||||||||||| ||||| |||||||| ||||| ||||||||| ||||||| || ||||||||||| | |
|
|
| T |
37859335 |
ctcttgggccttcgtccatatgtgaagcgttacatgatgtaccaacaaggttgttttgctggtggcacggtgcttcgtttggctaaagacttggctgaaa |
37859236 |
T |
|
| Q |
204 |
acaacaaaggtgcccgtgtgttggttgtctgttc |
237 |
Q |
| |
|
||||||||||||| ||||||||||| || ||||| |
|
|
| T |
37859235 |
acaacaaaggtgctcgtgtgttggtagtttgttc |
37859202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 37863361 - 37863213
Alignment:
| Q |
104 |
ctcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggccaaggacttggctgaga |
203 |
Q |
| |
|
||||| ||||||||||| ||||||||| | || |||||||| || ||||| |||||||| ||||||||||||||| ||||||| || || |||||||| | |
|
|
| T |
37863361 |
ctcttgggtcttcgcccgtatgtgaagcgttatatgatgtatcaacaaggttgttttgctggtgggacggtgcttcgtttggctaaagatttggctgaaa |
37863262 |
T |
|
| Q |
204 |
acaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactgcagt |
252 |
Q |
| |
|
|||||||||| || ||||| ||||| || ||||| || |||||||||| |
|
|
| T |
37863261 |
acaacaaaggcgctcgtgttttggtggtttgttcggagatcactgcagt |
37863213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 104 - 226
Target Start/End: Original strand, 39030222 - 39030344
Alignment:
| Q |
104 |
ctcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggccaaggacttggctgaga |
203 |
Q |
| |
|
|||||||| ||| | |||||||| ||| | || ||||||||||| ||||| |||||||| |||| || || ||| | ||||| || || |||||||||| |
|
|
| T |
39030222 |
ctcttaggcctttgtccatatgtaaagcgttatatgatgtaccaacaaggttgttttgctggtgcgatggctcttcgcttggctaaagatttggctgaga |
39030321 |
T |
|
| Q |
204 |
acaacaaaggtgcccgtgtgttg |
226 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
39030322 |
acaacaaaggtgcccgtgtgttg |
39030344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 137 - 269
Target Start/End: Original strand, 35250995 - 35251127
Alignment:
| Q |
137 |
atgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggccaaggacttggctgagaacaacaaaggtgcccgtgtgttggttgtctgtt |
236 |
Q |
| |
|
||||||||||| ||||| ||||| || ||||| | ||| ||| ||||||| || || |||||||||||||| |||||||| ||||| | || || |||| |
|
|
| T |
35250995 |
atgatgtaccaacaagggtgtttcgctggtggtatggttcttcgtttggctaaagatttggctgagaacaataaaggtgctcgtgttcttgtggtttgtt |
35251094 |
T |
|
| Q |
237 |
ccgaagtcactgcagtcacatttcgcggcccta |
269 |
Q |
| |
|
| || |||||||||| || ||||| ||||||| |
|
|
| T |
35251095 |
cagagatcactgcagtgacttttcgtggcccta |
35251127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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