View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1306_low_2 (Length: 621)
Name: NF1306_low_2
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1306_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Complemental strand, 46681142 - 46680644
Alignment:
| Q |
1 |
ttgactattagattttaannnnnnngacagaatgtggatggtttgaatagacaaa-tatggtgatgtatatacgtacttttgttgtgggaagatctttgg |
99 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46681142 |
ttgactattagattttaatttttttgacagaatgtggattgtttgaatagacaaaatatggtga---------gtacttttgttgtgggaagatctttgg |
46681052 |
T |
|
| Q |
100 |
agaatgctccaagtaaaagggcttgatatccttggcagcaaaaagtgggcgctttttatcattcggagcgcttaacatggcagttacaagaccacctgtg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46681051 |
agaatgctccaagtaaaagggcttgatatccttggcagcaaaaagtgggcgctttttatcattcggagcgcttaacatggcagttacaagaccacctgtg |
46680952 |
T |
|
| Q |
200 |
cttgttcctgtaatcacatcaaagtaatctgcaagcctagcagattcaccatctaattcttgaagttgcgattcaaggaactcgaggatagttgcgggaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46680951 |
cttgttcctgtaatcacatcaaagtaatctgcaagcctagcagattcaccgtctaattcttgaagttgcgattcaaggaactcgaggatagttgcgggaa |
46680852 |
T |
|
| Q |
300 |
taattcccctaatgccgccaccatcaatgcttagtatagtcactaagtttccataggtaggaggctgaatctgtagaagtgatgattgtgttctctccat |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46680851 |
taattcccctaatgccgccaccatcaatgcttagtatagttactaagttgccataggtaggaggctgaatctgtagaagtgatgattgtgttctctccat |
46680752 |
T |
|
| Q |
400 |
caaatatatgtttgggaattaagttgaagtttggtcaggttattatgtggaatgccagagaattaaagctgaaag--tttatgaatattaatttgttgca |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46680751 |
caaatatatgtttgggaattaagttgaagtttggtcagg--------------------gaattaaagctgaaagtttttatgaatattaatttgttgca |
46680672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 68 - 432
Target Start/End: Complemental strand, 46677101 - 46676737
Alignment:
| Q |
68 |
tatacgtacttttgttgtgggaagatctttggagaatgctccaagtaaaagggcttgatatccttggcagcaaaaagtgggcgctttttatcattcggag |
167 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| || | ||||||||| |||| |
|
|
| T |
46677101 |
tatacgtacttctgttgtgggaaaatctttggacaatgttccaagtaaaagggcttgatatccttggcagcaaaaagtggacgttgtttatcatttggag |
46677002 |
T |
|
| Q |
168 |
cgcttaacatggcagttacaagaccacctgtgcttgttcctgtaatcacatcaaagtaatctgcaagcctagcagattcaccatctaattcttgaagttg |
267 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
46677001 |
cacttaacatggcagttacaagaccacctgtgctagttcctgtaatcacatcaaagtaatctgcgagcctagcagattcaccgtctaattcttgaagttg |
46676902 |
T |
|
| Q |
268 |
cgattcaaggaactcgaggatagttgcgggaataattcccctaatgccgccaccatcaatgcttagtatagtcactaagtttccataggtaggaggctga |
367 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||| || ||||| || |||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
46676901 |
tgattcaaggaactcgagaatagttgccggaataattcccctaataccaccaccgtcgatgcttagaatagtcactaagttcccataggtaggaggctga |
46676802 |
T |
|
| Q |
368 |
atctgtagaagtgatgattgtgttctctccatcaaatatatgtttgggaattaagttgaagtttg |
432 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46676801 |
atttgtagaagtgatgattgtgttctctccatcaaatatatgtttgggaattaagttgaagtttg |
46676737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 112 - 252
Target Start/End: Original strand, 6091023 - 6091163
Alignment:
| Q |
112 |
gtaaaagggcttgatatccttggcagcaaaaagtgggcgctttttatcattcggagcgcttaacatggcagttacaagaccacctgtgcttgttcctgta |
211 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| || || || | || ||||| || ||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
6091023 |
gtaaaagggcttgatatctttggcagcaaaaagtggacgattgtttttatcaggagcagctagcatggcagtcacaagacctcctgtacttgttcctgag |
6091122 |
T |
|
| Q |
212 |
atcacatcaaagtaatctgcaagcctagcagattcaccatc |
252 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
6091123 |
atcacatcaaagtaatctgcaagccttgcatcttcaccatc |
6091163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 2649525 - 2649574
Alignment:
| Q |
191 |
ccacctgtgcttgttcctgtaatcacatcaaagtaatctgcaagcctagc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2649525 |
ccacctgtgcttgttcctgtaatcacatcaaagtaatttgcaagcctagc |
2649574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University