View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1306_low_25 (Length: 314)
Name: NF1306_low_25
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1306_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 39672451 - 39672198
Alignment:
| Q |
1 |
cagccaaatgcttccctgtagccacaccaagccttgctgacaaaagctgaatcaaaagccccatagctgtggcccacataagaagccataacaaagaata |
100 |
Q |
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| T |
39672451 |
cagccaaatgcttccctgtagccacaccaagcctagctgacaaaagctgaatcaaaagtcccatagctgtggcccacataagaagccataacaaagaata |
39672352 |
T |
|
| Q |
101 |
cccagcaatggcaccagcttgtaggtctccttctaagttccctggatccaaaaacgctatactcattagaaaaccaggtccagtgaatagccatagcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39672351 |
cccagcaatggcaccagcttgtaggtctccttctaagttccctggatccaaaaacgctatactcattagaaaaccaggtccagtgaatagccatagcttc |
39672252 |
T |
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| Q |
201 |
ttccatgaaaatggtggcaccgaggtaccccagtttgtggattcgtctattcct |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39672251 |
ttccatgaaaatggtggcaccgaggtaccccagtttgtggattcgtctattcct |
39672198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 211
Target Start/End: Original strand, 9562357 - 9562520
Alignment:
| Q |
48 |
tgaatcaaaagccccatagctgtggcccacataagaagccataacaaagaatacccagcaatggcaccagcttgtaggtctccttctaagttccctggat |
147 |
Q |
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| T |
9562357 |
tgaatcaaaagccccatatcaatagcccacataagaagtcataacaatgaatacccagaaattgtaccagattaaagatcttcttccaagtttccaagat |
9562456 |
T |
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| Q |
148 |
ccaaaaacgctatactcattagaaaaccaggtccagtgaatagccatagcttcttccatgaaaa |
211 |
Q |
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| T |
9562457 |
ccaaaaatgctatactcattagaaaacccggtccactgaataagggtagtttcttccatgaaaa |
9562520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 5805400 - 5805616
Alignment:
| Q |
1 |
cagccaaatg-cttccctgtagccacaccaagccttgctgacaaaagctgaatcaaaagccccatagctgtggcccacataagaagccataacaaagaat |
99 |
Q |
| |
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|||||||||| |||||| ||||| ||||| | |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||| |
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| T |
5805400 |
cagccaaatgtcttccc-gtagcaacacctaaccttgctgacaaaagctgaatcaaaagccccatagcagtagcccacataagaagccataacaatgaat |
5805498 |
T |
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| Q |
100 |
acccagcaatggcaccagcttgtaggtctccttctaagttccctggatccaaaaacgctatactcattagaaaaccaggtccagtgaatagccatagctt |
199 |
Q |
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| T |
5805499 |
acccagcaattgcaccagattgaagatctccttccaagtttccaggatccaaaaatgctatactcattagaaaacctggtccactgaataaccagagttt |
5805598 |
T |
|
| Q |
200 |
cttccatgaaaatggtgg |
217 |
Q |
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|||||||||||| ||||| |
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| T |
5805599 |
cttccatgaaaacggtgg |
5805616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 45 - 211
Target Start/End: Original strand, 21016784 - 21016950
Alignment:
| Q |
45 |
agctgaatcaaaagccccatagctgtggcccacataagaagccataacaaagaatacccagcaatggcaccagcttgtaggtctccttctaagttccctg |
144 |
Q |
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||||||||||||||||| ||| || |||||||||||||| |||||||| ||||||| || ||| |||||| ||| || |||||||| ||||| || | |
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| T |
21016784 |
agctgaatcaaaagccctgtagtagtagcccacataagaagtcataacaacgaataccaagaaattacaccagattgaagatctccttccaagtttccag |
21016883 |
T |
|
| Q |
145 |
gatccaaaaacgctatactcattagaaaaccaggtccagtgaatagccatagcttcttccatgaaaa |
211 |
Q |
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|||||||||| | |||||||||||||||||| | ||| |||||| || | | |||||||||||||| |
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| T |
21016884 |
gatccaaaaatgttatactcattagaaaacctagcccactgaataaccgttgtttcttccatgaaaa |
21016950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 217
Target Start/End: Complemental strand, 10388194 - 10388046
Alignment:
| Q |
69 |
gtggcccacataagaagccataacaaagaatacccagcaatggcaccagcttgtaggtctccttctaagttccctggatccaaaaacgctatactcatta |
168 |
Q |
| |
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|||| |||||| | |||||| | ||| || ||||| ||||| ||||| ||||| | ||||||||||| ||| |||||||||||||| || | |||||||| |
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| T |
10388194 |
gtggaccacattaaaagccaaagcaacgagtaccctgcaatcgcaccggcttgcaagtctccttctatgtttcctggatccaaaaatgccacactcatta |
10388095 |
T |
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| Q |
169 |
gaaaaccaggtccagtgaatagccatagcttcttccatgaaaatggtgg |
217 |
Q |
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||| || || || ||||| ||||| ||||||||||||||||||||||| |
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| T |
10388094 |
gaagccctggccccgtgaagagccagagcttcttccatgaaaatggtgg |
10388046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 217
Target Start/End: Complemental strand, 47290208 - 47290077
Alignment:
| Q |
86 |
ccataacaaagaatacccagcaatggcaccagcttgtaggtctccttctaagttccctggatccaaaaacgctatactcattagaaaaccaggtccagtg |
185 |
Q |
| |
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||||| ||| |||||||| ||||| || || |||||||| || ||||| || ||||| ||||||||||| ||||||||||| | || || ||||| ||| |
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| T |
47290208 |
ccatagcaatgaataccctgcaatcgctcctgcttgtagatcaccttccaaattcccaggatccaaaaatgctatactcatcaagaatcctggtcctgtg |
47290109 |
T |
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| Q |
186 |
aatagccatagcttcttccatgaaaatggtgg |
217 |
Q |
| |
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|| | ||||||||||||||||||||| ||||| |
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| T |
47290108 |
aacatccatagcttcttccatgaaaaaggtgg |
47290077 |
T |
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