View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1306_low_26 (Length: 311)

Name: NF1306_low_26
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1306_low_26
NF1306_low_26
[»] chr4 (6 HSPs)
chr4 (67-245)||(27338581-27338759)
chr4 (175-242)||(41192850-41192918)
chr4 (173-228)||(30807602-30807658)
chr4 (67-145)||(49987346-49987423)
chr4 (94-138)||(18966497-18966541)
chr4 (94-142)||(20105761-20105809)
[»] chr1 (5 HSPs)
chr1 (71-145)||(4379927-4380000)
chr1 (67-145)||(9509236-9509313)
chr1 (173-236)||(43423731-43423795)
chr1 (67-145)||(52442791-52442868)
chr1 (80-149)||(26444293-26444361)
[»] chr7 (6 HSPs)
chr7 (67-147)||(5335840-5335919)
chr7 (94-145)||(27021993-27022044)
chr7 (67-141)||(24549978-24550051)
chr7 (173-211)||(30200195-30200233)
chr7 (68-146)||(40139202-40139279)
chr7 (67-147)||(36514490-36514569)
[»] chr5 (2 HSPs)
chr5 (174-242)||(42199299-42199368)
chr5 (173-236)||(43475252-43475316)
[»] chr3 (5 HSPs)
chr3 (174-212)||(21200561-21200599)
chr3 (93-147)||(37227873-37227927)
chr3 (67-145)||(46568034-46568111)
chr3 (173-207)||(50249396-50249430)
chr3 (94-147)||(33307090-33307143)
[»] chr8 (2 HSPs)
chr8 (173-214)||(18474189-18474230)
chr8 (74-147)||(36069568-36069640)
[»] chr6 (1 HSPs)
chr6 (101-146)||(10100143-10100188)
[»] chr2 (2 HSPs)
chr2 (76-144)||(9556656-9556723)
chr2 (101-145)||(40759050-40759094)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 8e-92; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 67 - 245
Target Start/End: Complemental strand, 27338759 - 27338581
Alignment:
Q  67 agcagagacgaggatgttgtgttgaattgtgtgataagactaaacaaaatatgattataaatgacaacattagagagagttaatgcagtagtaactttag 166  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27338759 agcagagacgaggacgttgtgttgaattgtgtgataagactaaacaaaatatgattataaatgacaacattagagagagttaatgcagtagtacctttag 27338660  T
Q  167 tagaaaatagtagaaatgatggtggaaactagacttaggtgatttgagtcatagagagaagacttgtagaatctgtggt 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27338659 tagaaaatagtagaaatgatggtggaaactagacttaggtgatttgagtcatagagagaagacttgtagaatctgtggt 27338581  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 41192850 - 41192918
Alignment:
Q  175 agtagaaatgatggtggaaactagacttaggtgatttgagtca--tagagagaagacttgtagaatctgt 242  Q
    |||||||| ||||||||||||||||||||||||||||| | ||  |||||||||||| |||||| |||||    
T  41192850 agtagaaaagatggtggaaactagacttaggtgatttgtg-catgtagagagaagacctgtagattctgt 41192918  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 30807602 - 30807658
Alignment:
Q  173 atagtagaaatgatggtggaaactagacttaggtgatttgag-tcatagagagaaga 228  Q
    |||||||||| |||||| ||||||| ||||||||||||||||  |||||||||||||    
T  30807602 atagtagaaaagatggtagaaactaaacttaggtgatttgagcacatagagagaaga 30807658  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 49987346 - 49987423
Alignment:
Q  67 agcagagacgaggatgttgtgttgaattgtgtgataagactaaacaaaatatgattataaatgacaacattagagagag 145  Q
    |||||||| ||||||||||||||||| ||| |  |||||||| |||  ||| ||||| |||||||||||||||| ||||    
T  49987346 agcagagatgaggatgttgtgttgaa-tgtttagtaagactagacatgataggattagaaatgacaacattagatagag 49987423  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 18966497 - 18966541
Alignment:
Q  94 tgtgtgataagactaaacaaaatatgattataaatgacaacatta 138  Q
    |||||| ||||| || |||||||| ||||||||||||||||||||    
T  18966497 tgtgtggtaagattagacaaaataggattataaatgacaacatta 18966541  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 20105809 - 20105761
Alignment:
Q  94 tgtgtgataagactaaacaaaatatgattataaatgacaacattagaga 142  Q
    |||||| |||||||| || | ||||||||| ||||||||||||||||||    
T  20105809 tgtgtggtaagactagacgagatatgattagaaatgacaacattagaga 20105761  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 4379927 - 4380000
Alignment:
Q  71 gagacgaggatgttgtgttgaattgtgtgataagactaaacaaaatatgattataaatgacaacattagagagag 145  Q
    |||| ||||||||||||||| || ||||| |||||||| | || ||||||||| |||||||||||||||||||||    
T  4379927 gagatgaggatgttgtgttggat-gtgtggtaagactagaaaagatatgattagaaatgacaacattagagagag 4380000  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 9509236 - 9509313
Alignment:
Q  67 agcagagacgaggatgttgtgttgaattgtgtgataagactaaacaaaatatgattataaatgacaacattagagagag 145  Q
    |||||||| ||||||||||||||| || | |||||||||||| |||  ||||||||| |||||||| ||||||||||||    
T  9509236 agcagagatgaggatgttgtgttggat-gagtgataagactagacaggatatgattagaaatgacaccattagagagag 9509313  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 43423731 - 43423795
Alignment:
Q  173 atagtagaaatgatggtggaaactagacttaggtgatttgagtca--tagagagaagacttgtaga 236  Q
    |||||||||| ||||||||||||||| |||||||| |||| | ||  |||||||||||||||||||    
T  43423731 atagtagaaaagatggtggaaactaggcttaggtggtttg-gccatgtagagagaagacttgtaga 43423795  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 52442868 - 52442791
Alignment:
Q  67 agcagagacgaggatgttgtgttgaattgtgtgataagactaaacaaaatatgattataaatgacaacattagagagag 145  Q
    |||||| | ||||||||||||||| | |||||| |||||||| |||| ||| ||||| |||||| |||||| |||||||    
T  52442868 agcagacatgaggatgttgtgttgga-tgtgtggtaagactagacaagataagattagaaatgagaacattggagagag 52442791  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 26444293 - 26444361
Alignment:
Q  80 atgttgtgttgaattgtgtgataagactaaacaaaatatgattataaatgacaacattagagagagttaa 149  Q
    ||||||||||| || ||||||||||| ||||||  |||||| || ||||||||| |||| ||||||||||    
T  26444293 atgttgtgttggat-gtgtgataagaataaacatgatatgactaaaaatgacaatattaaagagagttaa 26444361  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 5335840 - 5335919
Alignment:
Q  67 agcagagacgaggatgttgtgttgaattgtgtgataagactaaacaaaatatgattataaatgacaacattagagagagtt 147  Q
    |||||||| |||||||||| ||||||| ||||| |||||||| ||| |||   |||| |||||| ||||||||||||||||    
T  5335840 agcagagatgaggatgttgcgttgaat-gtgtggtaagactagacagaatgcaattagaaatgataacattagagagagtt 5335919  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 27022044 - 27021993
Alignment:
Q  94 tgtgtgataagactaaacaaaatatgattataaatgacaacattagagagag 145  Q
    ||||||||||||||| |||  ||| ||||| |||||||||||||||||||||    
T  27022044 tgtgtgataagactagacaggataggattaaaaatgacaacattagagagag 27021993  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 24550051 - 24549978
Alignment:
Q  67 agcagagacgaggatgttgtgttgaattgtgtgataagactaaacaaaatatgattataaatgacaacattagag 141  Q
    |||||||| ||||||||||||||| | |||||  |||||||| | | |||||||||| |||||| ||||||||||    
T  24550051 agcagagatgaggatgttgtgttgga-tgtgttgtaagactagatagaatatgattagaaatgataacattagag 24549978  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 30200233 - 30200195
Alignment:
Q  173 atagtagaaatgatggtggaaactagacttaggtgattt 211  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  30200233 atagtagaaaagatggtggaaactaggcttaggtgattt 30200195  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 40139279 - 40139202
Alignment:
Q  68 gcagagacgaggatgttgtgttgaattgtgtgataagactaaacaaaatatgattataaatgacaacattagagagagt 146  Q
    ||||||||||||||||||||| | || ||||| |||||||| ||   ||| ||||| ||| ||||||||||||||||||    
T  40139279 gcagagacgaggatgttgtgtgggat-gtgtggtaagactagacgggataagattagaaaagacaacattagagagagt 40139202  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 36514569 - 36514490
Alignment:
Q  67 agcagagacgaggatgttgtgttgaattgtgtgataagactaaacaaaatatgattataaatgacaacattagagagagtt 147  Q
    |||||||| |||||||||| |||| || ||||| |||||||||||   |||  |||| ||| |||||||||||||||||||    
T  36514569 agcagagatgaggatgttgcgttggat-gtgtggtaagactaaacgggatagaattagaaaggacaacattagagagagtt 36514490  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 42199299 - 42199368
Alignment:
Q  174 tagtagaaatgatggtggaaactagacttaggtgatttgagtca--tagagagaagacttgtagaatctgt 242  Q
    ||||||||| |||||||||||||||||||||||| |||| | ||  |||||||||||| |||||| |||||    
T  42199299 tagtagaaaagatggtggaaactagacttaggtggtttg-ggcatgtagagagaagacatgtagattctgt 42199368  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 43475252 - 43475316
Alignment:
Q  173 atagtagaaatgatggtggaaactagacttaggtgatttgagtcat-agagagaagacttgtaga 236  Q
    |||||||||| ||||||||||||||| |||||||| |||| ||  | ||||||||||| ||||||    
T  43475252 atagtagaaaagatggtggaaactaggcttaggtggtttgggtattcagagagaagacctgtaga 43475316  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 21200561 - 21200599
Alignment:
Q  174 tagtagaaatgatggtggaaactagacttaggtgatttg 212  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  21200561 tagtagaaaagatggtggaaactagacttaggtggtttg 21200599  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 37227873 - 37227927
Alignment:
Q  93 ttgtgtgataagactaaacaaaatatgattataaatgacaacattagagagagtt 147  Q
    ||||||| |||||||| |||| ||| ||||| ||||||| |||||||||||||||    
T  37227873 ttgtgtggtaagactagacaatataggattagaaatgaccacattagagagagtt 37227927  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 46568034 - 46568111
Alignment:
Q  67 agcagagacgaggatgttgtgttgaattgtgtgataagactaaacaaaatatgattataaatgacaacattagagagag 145  Q
    |||||||| ||||||||||||||| || ||||| |||||||| || | ||   |||| |||||||||||||||||||||    
T  46568034 agcagagatgaggatgttgtgttggat-gtgtgttaagactagaccagattgaattagaaatgacaacattagagagag 46568111  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 50249396 - 50249430
Alignment:
Q  173 atagtagaaatgatggtggaaactagacttaggtg 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  50249396 atagtagaaaagatggtggaaactagacttaggtg 50249430  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 33307090 - 33307143
Alignment:
Q  94 tgtgtgataagactaaacaaaatatgattataaatgacaacattagagagagtt 147  Q
    |||||| ||||||||||||  ||| ||||| ||| |||||||||||||||||||    
T  33307090 tgtgtggtaagactaaacatgataagattagaaacgacaacattagagagagtt 33307143  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 18474230 - 18474189
Alignment:
Q  173 atagtagaaatgatggtggaaactagacttaggtgatttgag 214  Q
    |||||||||||||||||||||||||| ||||| || ||||||    
T  18474230 atagtagaaatgatggtggaaactaggcttagttggtttgag 18474189  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 36069568 - 36069640
Alignment:
Q  74 acgaggatgttgtgttgaattgtgtgataagactaaacaaaatatgattataaatgacaacattagagagagtt 147  Q
    ||||||||||||||||| || ||||| |||||||| ||   ||| ||||| ||| |||||||||||||||||||    
T  36069568 acgaggatgttgtgttggat-gtgtggtaagactagacgggataagattagaaacgacaacattagagagagtt 36069640  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 10100188 - 10100143
Alignment:
Q  101 taagactaaacaaaatatgattataaatgacaacattagagagagt 146  Q
    |||||||| |||| ||||||||| |||||||| |||||||||||||    
T  10100188 taagactagacaatatatgattagaaatgacaccattagagagagt 10100143  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 9556723 - 9556656
Alignment:
Q  76 gaggatgttgtgttgaattgtgtgataagactaaacaaaatatgattataaatgacaacattagagaga 144  Q
    ||||||||||||||| || ||||| ||||| || ||   ||||||||| ||||||||||||||||||||    
T  9556723 gaggatgttgtgttggat-gtgtggtaagattagacgggatatgattagaaatgacaacattagagaga 9556656  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 40759050 - 40759094
Alignment:
Q  101 taagactaaacaaaatatgattataaatgacaacattagagagag 145  Q
    |||||||| |||| ||| ||||| |||||||||||||||||||||    
T  40759050 taagactagacaagataagattagaaatgacaacattagagagag 40759094  T

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