View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1306_low_28 (Length: 295)
Name: NF1306_low_28
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1306_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 34431708 - 34431431
Alignment:
| Q |
1 |
attatcaaatgagacaaggagtagtacttgtgattcagtggagggccgtagtgtcagtgattcattatcatcctcatcagagtattgcttgtttctatat |
100 |
Q |
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| T |
34431708 |
attatcaaatgagacaaggagtagtacttgtgattcagtggagggccgtagtgtcagtgattcattatcatcctcatcagagtattgcttgtttctatat |
34431609 |
T |
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| Q |
101 |
gcttggaaggttgaatgaaaagtatggatcatatcatatatctcatccgaatggtgaatttgacagaatcacgataacattataattttgttcaatagtt |
200 |
Q |
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| T |
34431608 |
gcttggaaggttgaatgaaaagtatgtatcatatcatatatctcatccgaatggtgaatttgacaaaatcacgataacattataattttgttttatagtt |
34431509 |
T |
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| Q |
201 |
tttgataaaattatgatgacaccgtgattctggtaatcagttaagtggggtgtggggccaaaaaggtatataggagtt |
278 |
Q |
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| T |
34431508 |
tttgataaaattatgatgacaccgtgattctgttaaacaattaagtggggtgtggggccaaaaaggtatataggagtt |
34431431 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 43402649 - 43402602
Alignment:
| Q |
74 |
tcatcagagtattgcttgtttctatatgcttggaaggttgaatgaaaa |
121 |
Q |
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| T |
43402649 |
tcatcagagttttgcttgtttctttatgcttggaaggttgaatgaaaa |
43402602 |
T |
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