View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1306_low_32 (Length: 292)
Name: NF1306_low_32
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1306_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 49 - 215
Target Start/End: Original strand, 799906 - 800072
Alignment:
| Q |
49 |
ggagcagagaccttaataagcgtgaggtactaactgatcaagagaggcagaaactagaagaggacaagaagaaggtaatgtatattacattttttggcaa |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
799906 |
ggagcagagaccttaataagcgtgaggtactaactgatcaagagaggcagaaactagaagaggacaagaagaaggtaatgtatattacattttttggcaa |
800005 |
T |
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| Q |
149 |
tcagtatatgcccattttaaatattttttactgctaatcttacactcttatctaccattgtccttgc |
215 |
Q |
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| T |
800006 |
tcagtatatgcccattttaaatattttttactgctaatcttacactcttatctaccattgtccttgc |
800072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 49 - 215
Target Start/End: Original strand, 52284725 - 52284888
Alignment:
| Q |
49 |
ggagcagagaccttaataagcgtgaggtactaactgatcaagagaggcagaaactagaagaggacaagaagaaggtaatgtatattacattttttggcaa |
148 |
Q |
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| T |
52284725 |
ggagcagagatctgaataaacgtgaggtactaactgatcaagagaggcagaaactggaagaggacaagaagaaggtaacatatattacattttt---caa |
52284821 |
T |
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| Q |
149 |
tcagtatatgcccattttaaatattttttactgctaatcttacactcttatctaccattgtccttgc |
215 |
Q |
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| T |
52284822 |
ttaatatatgcccatattaaatattttttgttgctgatcatatgttcttatctaccattgtccttgc |
52284888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 177
Target Start/End: Original strand, 54792058 - 54792180
Alignment:
| Q |
49 |
ggagcagagaccttaataagcgtgaggtactaactgatcaagagaggcagaaactagaagaggacaagaagaaggtaatgtatattacattttttggcaa |
148 |
Q |
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| T |
54792058 |
ggagcagagatctaaataagcgtgaggtactaactgatcaagagaggcagaaactggaagaggacaagaagaaggta---tatattgcattttt---caa |
54792151 |
T |
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| Q |
149 |
tcagtatatgcccattttaaatatttttt |
177 |
Q |
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| T |
54792152 |
ttagtatttgcacattttaaatatttttt |
54792180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 49 - 177
Target Start/End: Complemental strand, 54777086 - 54776964
Alignment:
| Q |
49 |
ggagcagagaccttaataagcgtgaggtactaactgatcaagagaggcagaaactagaagaggacaagaagaaggtaatgtatattacattttttggcaa |
148 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||| ||||||| ||| |
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| T |
54777086 |
ggagcagagatctaaataagcgtgaggtactaactgatcaagagagacagaaactggaagaggacaagaagaaggta---tatattgcattttt---caa |
54776993 |
T |
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| Q |
149 |
tcagtatatgcccattttaaatatttttt |
177 |
Q |
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| T |
54776992 |
ttagtatttgcacattttaaatatttttt |
54776964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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