View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1306_low_33 (Length: 287)
Name: NF1306_low_33
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1306_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 131 - 270
Target Start/End: Original strand, 41593941 - 41594080
Alignment:
| Q |
131 |
aactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41593941 |
aactgcaatgttttcatatttttgttgttatgcacatcttgagcaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca |
41594040 |
T |
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| Q |
231 |
atgttatcacggcccacccacattttgttcatattgttgg |
270 |
Q |
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| T |
41594041 |
atgttatcacggcccacccacattttgttcatattattgg |
41594080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 131 - 270
Target Start/End: Complemental strand, 12869837 - 12869698
Alignment:
| Q |
131 |
aactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca |
230 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12869837 |
aacttcaatgttttcatatttttgttgttatgcacatcttgagcaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca |
12869738 |
T |
|
| Q |
231 |
atgttatcacggcccacccacattttgttcatattgttgg |
270 |
Q |
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| T |
12869737 |
atgttatcacggcccacccacattttgttcatattattgg |
12869698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 131 - 270
Target Start/End: Original strand, 14006810 - 14006949
Alignment:
| Q |
131 |
aactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14006810 |
aactgcaatgttttcatatttttgttgttatgcacatcttgagcaaccttgcatttgttatgtgattctcatctcttgttatggcagattggcagtagca |
14006909 |
T |
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| Q |
231 |
atgttatcacggcccacccacattttgttcatattgttgg |
270 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
14006910 |
atgttatcacggcccacccacattttgttcatattattgg |
14006949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 131 - 252
Target Start/End: Complemental strand, 23123989 - 23123876
Alignment:
| Q |
131 |
aactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca |
230 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||| |
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| T |
23123989 |
aactacaatgttttcatatttttgttgttatgcacatcttgagcaaccttgcaattgttatgtgattctctgctcttgttatg--------gcagtagca |
23123898 |
T |
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| Q |
231 |
atgttatcacggcccacccaca |
252 |
Q |
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|||||||||||||||||||||| |
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| T |
23123897 |
atgttatcacggcccacccaca |
23123876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 23123836 - 23123786
Alignment:
| Q |
220 |
tggcagtagcaatgttatcacggcccacccacattttgttcatattgttgg |
270 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
23123836 |
tggcagtagcaatgttatcacggctcacccacattttgttcatattattgg |
23123786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 131 - 270
Target Start/End: Original strand, 43522545 - 43522684
Alignment:
| Q |
131 |
aactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43522545 |
aactgcaatgttttcatatttttgttgttatgcacatcttgagcaaccttgcatttgttatgtgattctcttctcttgctatggcagattggcagtagca |
43522644 |
T |
|
| Q |
231 |
atgttatcacggcccacccacattttgttcatattgttgg |
270 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
43522645 |
atgttatcacggcccacccacattttgttcatattattgg |
43522684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 131 - 252
Target Start/End: Complemental strand, 22512564 - 22512451
Alignment:
| Q |
131 |
aactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca |
230 |
Q |
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||||| ||| |||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| || |||||||| |
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| T |
22512564 |
aactggaatattttcagttttttgtagttatgcacatcttgagcaaccttgcatttgttatgtgattctcttatcttgtta--------tgacagtagca |
22512473 |
T |
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| Q |
231 |
atgttatcacggcccacccaca |
252 |
Q |
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|
|||||||||||| ||||||||| |
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| T |
22512472 |
atgttatcacgggccacccaca |
22512451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 22512411 - 22512361
Alignment:
| Q |
220 |
tggcagtagcaatgttatcacggcccacccacattttgttcatattgttgg |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22512411 |
tggcagtagcaatgttatcacggcccacccacattttgttcatattattgg |
22512361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 32103315 - 32103271
Alignment:
| Q |
143 |
ttcatatttttgttgttatgcacatcttgaggaaccttgcatttg |
187 |
Q |
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||||||||||||||||||||||||||||||| |||| | |||||| |
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| T |
32103315 |
ttcatatttttgttgttatgcacatcttgagcaaccgttcatttg |
32103271 |
T |
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