View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1306_low_36 (Length: 271)
Name: NF1306_low_36
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1306_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 19172359 - 19172246
Alignment:
| Q |
1 |
ttcttgacgacgaagacaatgaaaccgaaaccaatgataattcatcggtttcaatgtcttctgatcgtccatggcaaatagccatggcatggaggaatcc |
100 |
Q |
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| T |
19172359 |
ttcttgacgacgaagacaatgaaaccgaaaccaatgataattcatcggtttcaatgtcttctgatcgtccatggcaaatagccatggcgtggaggaatcc |
19172260 |
T |
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| Q |
101 |
atcagaaaccctaa |
114 |
Q |
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| T |
19172259 |
atcagaaaccctaa |
19172246 |
T |
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