View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1306_low_41 (Length: 251)
Name: NF1306_low_41
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1306_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 2701340 - 2701190
Alignment:
| Q |
10 |
attatactaagaaagaattattggtacggttcaattcaatcccattttttgtttccaatttctgtgcaaaacatgcctaaccctaaatctatcatggcta |
109 |
Q |
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| T |
2701340 |
attatactaagaaagaattattggtacggttcaattcaatcccattttttgtttccaatttctatgcaaaacatgcctaaccctaaatctatcattgcta |
2701241 |
T |
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| Q |
110 |
gagttcaaggtattttcaaataatataagttggcgtaaaagaataataattat |
162 |
Q |
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| T |
2701240 |
gagttcaaggtattttcaaata--ataagttggcgtaaaagaataataattat |
2701190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 146 - 251
Target Start/End: Complemental strand, 2701178 - 2701071
Alignment:
| Q |
146 |
aaaagaataataattataataatagcaaagtcggtatnnnnnnnnn--ttaataatagcaaagttttaaacatttggccaagaaatgtgccacctgtaac |
243 |
Q |
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| T |
2701178 |
aaaagaataataattataataatagcaaagtcggtataaaaaaaaaaattaataatagcaaagttttaaatatttggccaagaaatgtgccacacgtaag |
2701079 |
T |
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| Q |
244 |
acataaat |
251 |
Q |
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|||||||| |
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| T |
2701078 |
acataaat |
2701071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 2698852 - 2698816
Alignment:
| Q |
193 |
taataatagcaaagttttaaacatttggccaagaaat |
229 |
Q |
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| T |
2698852 |
taataataggaaagttttaaacatttggccaagaaat |
2698816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 2698956 - 2698878
Alignment:
| Q |
55 |
tttttgtttccaatttctgtgcaaaacatgcctaaccctaaatctatcatggctagagttcaaggtattttcaaataata |
134 |
Q |
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| T |
2698956 |
tttttctttccaatttctatgcaaaacatgcctgactctaaa-ctaacattgctagagtgcaacctattttcaagtaata |
2698878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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