View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1306_low_45 (Length: 231)

Name: NF1306_low_45
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1306_low_45
NF1306_low_45
[»] chr1 (11 HSPs)
chr1 (1-216)||(942191-942406)
chr1 (1-216)||(971461-971676)
chr1 (1-199)||(960169-960367)
chr1 (1-199)||(949197-949395)
chr1 (1-185)||(936302-936486)
chr1 (1-164)||(909573-909736)
chr1 (1-166)||(975127-975292)
chr1 (21-167)||(901854-902002)
chr1 (68-189)||(924081-924202)
chr1 (1-166)||(419869-420034)
chr1 (77-188)||(916031-916142)
[»] scaffold0312 (1 HSPs)
scaffold0312 (1-166)||(10537-10702)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 942406 - 942191
Alignment:
Q  1 tccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttcct 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  942406 tccaatgaagttatacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttctcttcacaatttcagcttcctttgatccttcct 942307  T
Q  101 tgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaacttctttaggcaagaattttgctccactattatttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  942306 tgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaacttctttaggcaagaattttgctccactattatttgt 942207  T
Q  201 caattgcaagttcaat 216  Q
     |||||||||||||||    
T  942206 gaattgcaagttcaat 942191  T

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Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 971676 - 971461
Alignment:
Q  1 tccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttcct 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  971676 tccaatgaagttatacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttctcttcacaatttcagcttcctttgatccttcct 971577  T
Q  101 tgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaacttctttaggcaagaattttgctccactattatttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  971576 tgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaacttctttaggcaagaattttgctccactattatttgt 971477  T
Q  201 caattgcaagttcaat 216  Q
     |||||||||||||||    
T  971476 gaattgcaagttcaat 971461  T

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Target: chr1; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 960367 - 960169
Alignment:
Q  1 tccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttcct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  960367 tccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttctcttcacaatttcagcttcctttgatccttcct 960268  T
Q  101 tgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaacttctttaggcaagaattttgctccactattatttg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||    
T  960267 tgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaacttctctaggcaagaattttgttccattattatttg 960169  T

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Target: chr1; HSP #4
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 949395 - 949197
Alignment:
Q  1 tccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttcct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  949395 tccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttctcttcacaatttcagcttcctttgatccttcct 949296  T
Q  101 tgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaacttctttaggcaagaattttgctccactattatttg 199  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||    
T  949295 tgatggaaaacttgttgagtatgttttccaatttgtttgatgaaaagggtatggaattagcaacttctctaggcaagaattttgttccattattatttg 949197  T

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Target: chr1; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 936486 - 936302
Alignment:
Q  1 tccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttcct 100  Q
    |||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||  | ||||||||||||| ||| | || ||||||||    
T  936486 tccaatgatgttacacaaagcttttcctctcctttgatgccattttcttcacactcacttattgtgttcttcacaatttcagattcttctgttccttcct 936387  T
Q  101 tgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaacttctttaggcaagaattttgc 185  Q
    ||||||| |||  ||| || |||||||| | |||| |||| ||||| ||||| ||||||||||||||||||||||||||||||||    
T  936386 tgatggagaacaagttaaggatgttttcaactttgcttgaagaaaaaggtattgaattagcaacttctttaggcaagaattttgc 936302  T

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Target: chr1; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 909736 - 909573
Alignment:
Q  1 tccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttcct 100  Q
    |||||||| || ||||||||||||||||| |||||||| |||| ||||||||| |||||||||||  | ||||||||||||| |||| | ||||||| ||    
T  909736 tccaatgatgtcacacaaagcttttcctctcctttgataccatatgcttcacattcacttattgtgttcttcacaatttcagattccgtcgatccttgct 909637  T
Q  101 tgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaac 164  Q
    ||||||| || | ||| || |||||||||| |||||||||||||||||| |||||||| |||||    
T  909636 tgatggagaagtagttaaggatgttttccaatttgtttgatgaaaagggaatggaattcgcaac 909573  T

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Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 975292 - 975127
Alignment:
Q  1 tccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttcct 100  Q
    |||||||| |||||||||| ||||||||| |||||||| || |   ||||||||||||| || ||  | |||||||| | | |  ||||||| |||| ||    
T  975292 tccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcactgatggtgttcttcacaatctgaacaccctttgaccctttct 975193  T
Q  101 tgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaactt 166  Q
    |||||   |||||||||| ||||| |||||| |||||||||||||||||||| |||||||||||||    
T  975192 tgatgtttaacttgttgattatgtattccatcttgtttgatgaaaagggtattgaattagcaactt 975127  T

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Target: chr1; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 167
Target Start/End: Complemental strand, 902002 - 901854
Alignment:
Q  21 cttttcctcacctttgatgccatttgcttcacactcact-tattgttctt-ttcacaatttcagcttcctttgatccttccttgatggaaaacttgttga 118  Q
    ||||| ||| ||||||||| ||||| ||||||||||||| || || | || |||||||||| ||  || |||||||||| |||||||||||| | ||| |    
T  902002 cttttgctctcctttgatgtcattttcttcacactcactataatggtattcttcacaattttagactcttttgatccttgcttgatggaaaagtggttaa 901903  T
Q  119 gtatgttttccattttgtttgatgaaaagggtatggaattagcaacttc 167  Q
    | || ||||||| |||||||||||||||||| |||||||||||||||||    
T  901902 ggattttttccactttgtttgatgaaaagggaatggaattagcaacttc 901854  T

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Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 189
Target Start/End: Complemental strand, 924202 - 924081
Alignment:
Q  68 ttttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaacttc 167  Q
    ||||||||||||||  ||||   ||||||| ||||||||| || | ||| || |||||||||| ||||||||||||||| ||||||||||||||||||||    
T  924202 ttttcacaatttcatattccgccgatccttgcttgatggagaagtagttaaggatgttttccactttgtttgatgaaaatggtatggaattagcaacttc 924103  T
Q  168 tttaggcaagaattttgctcca 189  Q
       |||||||||| ||||||||    
T  924102 acgaggcaagaatgttgctcca 924081  T

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Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 419869 - 420034
Alignment:
Q  1 tccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttcct 100  Q
    |||||||| |||||||||| ||||||||| |||||||| || |   ||||||||||||| || ||  | |||||||| | | |  ||||||| |||| ||    
T  419869 tccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcactgatggtgttcttcacaatctgaacaccctttgaccctttct 419968  T
Q  101 tgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaactt 166  Q
    |||||   |||||||||| ||||| |||||  |||||| ||||||| ||||| |||||||||||||    
T  419969 tgatgtttaacttgttgattatgtattccaccttgtttaatgaaaaaggtattgaattagcaactt 420034  T

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Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 916142 - 916031
Alignment:
Q  77 tttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaacttctttaggcaa 176  Q
    |||||| ||||  |||||||| ||||||||| || |  || || |||||||||| ||||||||||||||| |||||||||||||| |||||   ||||||    
T  916142 tttcagattccgctgatccttgcttgatggagaagtaattaaggatgttttccactttgtttgatgaaaatggtatggaattagcgacttcacgaggcaa 916043  T
Q  177 gaattttgctcc 188  Q
    |||| |||||||    
T  916042 gaatgttgctcc 916031  T

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Target: scaffold0312 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 10702 - 10537
Alignment:
Q  1 tccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttcct 100  Q
    |||||||| |||||||||| ||||||||| |||||||| || |   ||||||||||||| || ||  | |||||||| | | |  ||||||| |||| ||    
T  10702 tccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcactgatggtgttcttcacaatctgaacaccctttgaccctttct 10603  T
Q  101 tgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaactt 166  Q
    |||||   |||||||||| ||||| |||||  |||||| ||||||| ||||| |||||||||||||    
T  10602 tgatgtttaacttgttgattatgtattccaccttgtttaatgaaaaaggtattgaattagcaactt 10537  T

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