View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1306_low_46 (Length: 222)

Name: NF1306_low_46
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1306_low_46
NF1306_low_46
[»] chr4 (30 HSPs)
chr4 (1-215)||(26474808-26475022)
chr4 (26-87)||(39041297-39041358)
chr4 (40-84)||(4305736-4305780)
chr4 (26-74)||(21387240-21387288)
chr4 (26-74)||(31050698-31050746)
chr4 (38-74)||(40813817-40813853)
chr4 (25-104)||(2165504-2165582)
chr4 (26-73)||(36962652-36962699)
chr4 (38-73)||(37707392-37707427)
chr4 (26-84)||(49747524-49747582)
chr4 (40-74)||(53756767-53756801)
chr4 (40-84)||(2061764-2061808)
chr4 (40-84)||(25753183-25753227)
chr4 (40-84)||(38929838-38929882)
chr4 (43-79)||(39421044-39421080)
chr4 (40-79)||(38637263-38637302)
chr4 (26-84)||(46698811-46698869)
chr4 (39-88)||(2792296-2792345)
chr4 (26-79)||(6599976-6600029)
chr4 (40-73)||(8255038-8255071)
chr4 (40-73)||(8268456-8268489)
chr4 (26-74)||(2825780-2825828)
chr4 (36-80)||(12296055-12296099)
chr4 (27-87)||(12470049-12470109)
chr4 (27-87)||(12470618-12470678)
chr4 (27-87)||(12489818-12489878)
chr4 (27-79)||(16501729-16501781)
chr4 (40-84)||(22811186-22811230)
chr4 (26-74)||(35800486-35800534)
chr4 (40-84)||(53823447-53823491)
[»] scaffold0036 (2 HSPs)
scaffold0036 (3-204)||(69328-69542)
scaffold0036 (3-204)||(64186-64401)
[»] chr6 (16 HSPs)
chr6 (23-88)||(34105407-34105472)
chr6 (23-88)||(20970427-20970492)
chr6 (40-84)||(26216045-26216089)
chr6 (26-72)||(26534757-26534803)
chr6 (26-84)||(32935365-32935423)
chr6 (26-72)||(34092792-34092838)
chr6 (43-84)||(20701829-20701870)
chr6 (43-84)||(21266127-21266168)
chr6 (40-84)||(16510327-16510371)
chr6 (26-74)||(20499916-20499964)
chr6 (39-87)||(34090373-34090421)
chr6 (39-74)||(7546465-7546500)
chr6 (45-79)||(13423482-13423516)
chr6 (26-87)||(9239221-9239282)
chr6 (44-84)||(3117508-3117548)
chr6 (40-84)||(9224052-9224096)
[»] chr2 (22 HSPs)
chr2 (9-74)||(4162056-4162121)
chr2 (26-79)||(14405195-14405248)
chr2 (40-84)||(16959993-16960037)
chr2 (40-84)||(22885159-22885203)
chr2 (22-154)||(37830996-37831128)
chr2 (40-79)||(10524108-10524147)
chr2 (40-74)||(1269494-1269528)
chr2 (23-73)||(8520396-8520446)
chr2 (28-74)||(23665440-23665486)
chr2 (26-79)||(7874288-7874341)
chr2 (36-84)||(4471930-4471978)
chr2 (40-84)||(39338891-39338935)
chr2 (40-79)||(14106555-14106594)
chr2 (40-79)||(15126441-15126480)
chr2 (28-79)||(23650384-23650435)
chr2 (40-79)||(27739986-27740025)
chr2 (23-74)||(34143089-34143140)
chr2 (40-74)||(10173614-10173648)
chr2 (44-85)||(9560813-9560854)
chr2 (26-79)||(36276202-36276255)
chr2 (26-77)||(17105408-17105460)
chr2 (40-72)||(33788670-33788702)
[»] chr1 (29 HSPs)
chr1 (27-88)||(15840934-15840995)
chr1 (40-84)||(46692845-46692889)
chr1 (34-88)||(30655565-30655619)
chr1 (26-79)||(7857650-7857703)
chr1 (26-79)||(27031871-27031924)
chr1 (23-88)||(41403020-41403085)
chr1 (26-79)||(46814498-46814551)
chr1 (40-84)||(19598647-19598691)
chr1 (40-84)||(31585786-31585830)
chr1 (40-84)||(41920463-41920507)
chr1 (40-79)||(5459172-5459211)
chr1 (37-88)||(33034668-33034719)
chr1 (26-79)||(22200005-22200058)
chr1 (26-79)||(24658926-24658979)
chr1 (23-88)||(32876648-32876713)
chr1 (40-84)||(17033597-17033641)
chr1 (40-84)||(38544764-38544808)
chr1 (40-79)||(4651791-4651830)
chr1 (9-88)||(38564881-38564960)
chr1 (40-74)||(6583252-6583286)
chr1 (40-74)||(24684514-24684548)
chr1 (40-73)||(27905423-27905456)
chr1 (48-84)||(5389447-5389483)
chr1 (26-74)||(9081541-9081589)
chr1 (40-84)||(9313315-9313359)
chr1 (48-84)||(27102210-27102246)
chr1 (29-73)||(28887773-28887817)
chr1 (40-84)||(30685930-30685974)
chr1 (40-84)||(46603403-46603447)
[»] scaffold0620 (2 HSPs)
scaffold0620 (24-88)||(3825-3889)
scaffold0620 (26-72)||(8126-8172)
[»] chr7 (21 HSPs)
chr7 (38-88)||(46262141-46262191)
chr7 (26-85)||(27993561-27993620)
chr7 (26-79)||(6584906-6584959)
chr7 (26-75)||(25153217-25153266)
chr7 (34-79)||(38485561-38485606)
chr7 (44-84)||(3478367-3478407)
chr7 (40-84)||(13311850-13311894)
chr7 (40-79)||(9349760-9349799)
chr7 (40-79)||(34389973-34390012)
chr7 (38-85)||(35206718-35206765)
chr7 (42-84)||(10244195-10244237)
chr7 (41-74)||(17802852-17802885)
chr7 (40-84)||(6716762-6716806)
chr7 (42-74)||(8745166-8745198)
chr7 (40-72)||(38306272-38306304)
chr7 (40-79)||(42533283-42533322)
chr7 (26-83)||(2613894-2613951)
chr7 (40-73)||(9428142-9428175)
chr7 (44-84)||(12480901-12480941)
chr7 (40-84)||(33435120-33435164)
chr7 (40-72)||(41089786-41089818)
[»] chr3 (26 HSPs)
chr3 (21-152)||(30127254-30127386)
chr3 (28-79)||(34475785-34475836)
chr3 (157-215)||(12220793-12220851)
chr3 (33-123)||(19295853-19295942)
chr3 (40-85)||(20710733-20710778)
chr3 (151-215)||(7424820-7424884)
chr3 (40-84)||(17550968-17551012)
chr3 (40-84)||(19176513-19176557)
chr3 (26-74)||(24099363-24099411)
chr3 (40-79)||(14879446-14879485)
chr3 (40-79)||(45398807-45398846)
chr3 (47-84)||(823461-823498)
chr3 (40-84)||(14755291-14755335)
chr3 (26-82)||(23328378-23328434)
chr3 (26-74)||(24712635-24712683)
chr3 (40-84)||(43012386-43012430)
chr3 (40-84)||(47945717-47945761)
chr3 (40-79)||(40023603-40023642)
chr3 (46-84)||(1652912-1652950)
chr3 (9-66)||(51065886-51065944)
chr3 (23-72)||(24991953-24992002)
chr3 (40-84)||(5556581-5556625)
chr3 (40-84)||(9584079-9584123)
chr3 (40-84)||(33143975-33144019)
chr3 (44-72)||(37123397-37123425)
chr3 (44-84)||(39021302-39021342)
[»] scaffold0236 (1 HSPs)
scaffold0236 (59-154)||(10358-10452)
[»] chr8 (21 HSPs)
chr8 (26-84)||(35062454-35062512)
chr8 (40-84)||(24995421-24995465)
chr8 (40-84)||(31207388-31207432)
chr8 (40-84)||(34389031-34389075)
chr8 (38-73)||(33967335-33967370)
chr8 (26-84)||(10552265-10552323)
chr8 (26-79)||(15821410-15821463)
chr8 (40-85)||(40531243-40531288)
chr8 (26-74)||(544386-544434)
chr8 (40-84)||(15906697-15906741)
chr8 (25-72)||(16055238-16055285)
chr8 (40-79)||(32066326-32066365)
chr8 (40-103)||(41893407-41893470)
chr8 (26-84)||(30236154-30236212)
chr8 (40-74)||(36630848-36630882)
chr8 (26-79)||(32945734-32945787)
chr8 (26-82)||(5221866-5221922)
chr8 (40-84)||(9519510-9519554)
chr8 (44-84)||(17657028-17657068)
chr8 (36-80)||(17720861-17720905)
chr8 (40-84)||(37986884-37986928)
[»] scaffold0572 (1 HSPs)
scaffold0572 (23-88)||(6277-6342)
[»] scaffold0127 (1 HSPs)
scaffold0127 (23-88)||(31250-31315)
[»] chr5 (13 HSPs)
chr5 (38-82)||(25341707-25341751)
chr5 (40-84)||(33258908-33258952)
chr5 (40-84)||(34378109-34378153)
chr5 (23-74)||(12046249-12046300)
chr5 (40-79)||(13954265-13954304)
chr5 (26-88)||(28765624-28765686)
chr5 (41-74)||(39184223-39184256)
chr5 (40-84)||(7195265-7195309)
chr5 (40-84)||(7392057-7392101)
chr5 (40-84)||(25992018-25992062)
chr5 (26-85)||(18557534-18557592)
chr5 (40-83)||(26045991-26046034)
chr5 (46-84)||(18593260-18593298)
[»] scaffold0200 (1 HSPs)
scaffold0200 (40-74)||(19394-19428)
[»] scaffold0119 (1 HSPs)
scaffold0119 (40-74)||(42174-42208)
[»] scaffold1613 (1 HSPs)
scaffold1613 (40-84)||(1043-1087)
[»] scaffold0068 (1 HSPs)
scaffold0068 (40-79)||(35802-35841)
[»] scaffold0157 (1 HSPs)
scaffold0157 (27-87)||(30599-30659)
[»] scaffold0050 (1 HSPs)
scaffold0050 (40-84)||(36718-36762)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 26474808 - 26475022
Alignment:
1 agtccagaagttgaggggcgtctagtgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttcttatctcaagctgt 100  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
26474808 agtccagaagttgaggggcgtctagtgatttgtttttggagtttggtgggccgatcacttttgattcgagatcgagagttagtttcttgtctcaagctgt 26474907  T
101 tttggcgtgtttttgtgtcttcttctacagactgaggattgatcggtggtggaagttgaattggttcagaatttcgactaagttggggtgatgaggtgag 200  Q
    |||||||||||||||||| || || || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
26474908 tttggcgtgtttttgtgtttttttttatagactgaggattgatcggtggtggaagttgaattggttcagaatttcggctaagttggggtgatgaggtgag 26475007  T
201 gtgttgtctgtggtg 215  Q
    ||||||| |||||||    
26475008 gtgttgtttgtggtg 26475022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 39041358 - 39041297
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttct 87  Q
    ||||||||||   |||||||||||||||||||||||||||||||||||  |||| |||||||    
39041358 tgatttgtttacagagtctggtgggccgatcacttttgattcgagatcaggagtcagtttct 39041297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 4305736 - 4305780
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||    
4305736 agtctggtggggcgatcacttttgattcgagatcgggagttagtt 4305780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 21387288 - 21387240
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcg 74  Q
    ||||||| | |||||||||||||| ||||||||||||||||||||||||    
21387288 tgatttggtgctggagtctggtggaccgatcacttttgattcgagatcg 21387240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 31050746 - 31050698
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcg 74  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||||||    
31050746 tgatttggttctaaagtctggtgggccgatcacttttgattcgagatcg 31050698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 40813853 - 40813817
Alignment:
38 ggagtctggtgggccgatcacttttgattcgagatcg 74  Q
    |||||||||||||||||||||||||||||||||||||    
40813853 ggagtctggtgggccgatcacttttgattcgagatcg 40813817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 2165504 - 2165582
Alignment:
25 gtgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttcttatctcaagctgttttg 104  Q
    ||||||||||||| |||| |||| |||||||| ||||||||| ||||||| |||| ||||||||  |||||||| |||||    
2165504 gtgatttgtttctagagtttggt-ggccgatcgcttttgatttgagatcgggagtcagtttcttgactcaagcttttttg 2165582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 36962699 - 36962652
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatc 73  Q
    ||||||| || ||||||||||||||||||| |||||||||||||||||    
36962699 tgatttggttttggagtctggtgggccgattacttttgattcgagatc 36962652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 37707427 - 37707392
Alignment:
38 ggagtctggtgggccgatcacttttgattcgagatc 73  Q
    ||||||||||||||||||||||||||||||||||||    
37707427 ggagtctggtgggccgatcacttttgattcgagatc 37707392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 49747524 - 49747582
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||| ||||  ||||||||| ||||||||||||||||| |||||||||||| ||||    
49747524 tgatttggttctaaagtctggtgagccgatcacttttgatttgagatcgagagtcagtt 49747582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 53756767 - 53756801
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcg 74  Q
    |||||||||||||||||||||||||||||||||||    
53756767 agtctggtgggccgatcacttttgattcgagatcg 53756801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 2061808 - 2061764
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||    
2061808 agtctggtgggctgatcacttttgattcgagattgagagtcagtt 2061764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 25753183 - 25753227
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||| ||||||||||||||||||||||| |||| ||||    
25753183 agtctggtggggcgatcacttttgattcgagatcgggagtcagtt 25753227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 38929838 - 38929882
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    |||||| ||||||||||||||||||||||||||| ||||| ||||    
38929838 agtctgctgggccgatcacttttgattcgagatcaagagtcagtt 38929882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 39421080 - 39421044
Alignment:
43 ctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    |||||||||||||||||||||||||||||||| ||||    
39421080 ctggtgggccgatcacttttgattcgagatcgggagt 39421044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 38637302 - 38637263
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
38637302 agtctggcgggccgatcacttttgattcgagatcgggagt 38637263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 46698869 - 46698811
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||| | ||| ||||||||||||||||  ||||||||||||||||| |||| ||||    
46698869 tgatttggtcctgtagtctggtgggccgattgcttttgattcgagatcgggagtcagtt 46698811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 2792345 - 2792296
Alignment:
39 gagtctggtgggccgatcacttttgattcgagatcgagagttagtttctt 88  Q
    |||||| || ||||||||||||||||||||||||||  ||| ||||||||    
2792345 gagtctagtaggccgatcacttttgattcgagatcggaagtcagtttctt 2792296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 6600029 - 6599976
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    |||||||  ||| |||||||||||||||||| ||||||||| ||||||| ||||    
6600029 tgatttggctctagagtctggtgggccgatcgcttttgattagagatcgggagt 6599976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 8255038 - 8255071
Alignment:
40 agtctggtgggccgatcacttttgattcgagatc 73  Q
    |||||||||||||||||||||||||| |||||||    
8255038 agtctggtgggccgatcacttttgatccgagatc 8255071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 8268456 - 8268489
Alignment:
40 agtctggtgggccgatcacttttgattcgagatc 73  Q
    |||||||||||||||||||||||||| |||||||    
8268456 agtctggtgggccgatcacttttgatccgagatc 8268489  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 2825780 - 2825828
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcg 74  Q
    ||||||| ||||  |||| ||||||||||||| ||||||||||||||||    
2825780 tgatttggttctaaagtccggtgggccgatcatttttgattcgagatcg 2825828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 12296055 - 12296099
Alignment:
36 ctggagtctggtgggccgatcacttttgattcgagatcgagagtt 80  Q
    ||||| |||||||||||||| ||||||| |||||||||| |||||    
12296055 ctggattctggtgggccgattacttttgcttcgagatcgggagtt 12296099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 12470049 - 12470109
Alignment:
27 gatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttct 87  Q
    ||||||||| |||||||||||| ||| |||| ||||| |||||||| | |||| |||||||    
12470049 gatttgtttatggagtctggtgtgccaatcaattttgcttcgagattgggagtcagtttct 12470109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 12470618 - 12470678
Alignment:
27 gatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttct 87  Q
    ||||||||| |||||||||||| ||| |||| ||||| |||||||| | |||| |||||||    
12470618 gatttgtttatggagtctggtgtgccaatcaattttgcttcgagattgggagtcagtttct 12470678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 12489818 - 12489878
Alignment:
27 gatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttct 87  Q
    ||||||||| |||||||| ||| ||| |||| ||||| |||||||| | ||||||||||||    
12489818 gatttgtttatggagtctagtgtgccaatcaattttgcttcgagattgggagttagtttct 12489878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 16501729 - 16501781
Alignment:
27 gatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    |||||| | ||| ||| ||||||||||||| ||||||||||||||||| ||||    
16501729 gatttgatcctgaagtttggtgggccgatcgcttttgattcgagatcgggagt 16501781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 22811230 - 22811186
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    |||||||||||||||||| |||| ||||||||||| |||| ||||    
22811230 agtctggtgggccgatcattttttattcgagatcgggagtcagtt 22811186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 35800486 - 35800534
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcg 74  Q
    ||||||| ||||| |||||||||  |||||| |||||||||||||||||    
35800486 tgatttggttctgaagtctggtgaaccgatcgcttttgattcgagatcg 35800534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 53823491 - 53823447
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    |||||||||| || ||||||||||||||||||||| |||| ||||    
53823491 agtctggtggaccaatcacttttgattcgagatcgggagtcagtt 53823447  T

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Target: scaffold0036 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 3 - 204
Target Start/End: Complemental strand, 69542 - 69328
Alignment:
3 tccagaagttgaggggcgtctagtgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttcttatctcaagctgttt 102  Q
    ||||| |||||| ||| | |||||||||||||||||||||||| || || |||||||||||||| |||||||||| | |||||||   |||||| | |||    
69542 tccaggagttgaagggtgcctagtgatttgtttctggagtctgatgtgctgatcacttttgatttgagatcgagattcagtttctatactcaagtttttt 69443  T
103 tg-------------gcgtgtttttgtgtcttcttctacagactgaggattgatcggtggtggaagttgaattggttcagaatttcgactaagttggggt 189  Q
    |              |||| |||| | ||||||| | ||||||||||||||||||||||||||||  |||||| |||| ||| |||| ||| |||| |||    
69442 tttttttttttttttgcgtattttggcgtcttctccgacagactgaggattgatcggtggtggaatctgaattagttcggaaattcggctatgttgtggt 69343  T
190 gatgaggtgaggtgt 204  Q
    |||||||||||||||    
69342 gatgaggtgaggtgt 69328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 204
Target Start/End: Complemental strand, 64401 - 64186
Alignment:
3 tccagaagttgaggggcgtctagtgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttcttatctcaagctgttt 102  Q
    ||||| |||||| ||| | |||||||||||||||||||||||| || || |||||||||||||| |||||||||| | |||||||   |||||| | |||    
64401 tccaggagttgaagggtgcctagtgatttgtttctggagtctgatgtgctgatcacttttgatttgagatcgagattcagtttctatactcaagtttttt 64302  T
103 tg--------------gcgtgtttttgtgtcttcttctacagactgaggattgatcggtggtggaagttgaattggttcagaatttcgactaagttgggg 188  Q
    |               |||| |||| | ||||||| | ||||||||||||||||||||||||||||  |||||| |||| ||| |||| ||| |||| ||    
64301 ttttttttttttttttgcgtattttggcgtcttctccgacagactgaggattgatcggtggtggaatctgaattagttcggaaattcggctatgttgtgg 64202  T
189 tgatgaggtgaggtgt 204  Q
    ||||||||||||||||    
64201 tgatgaggtgaggtgt 64186  T

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Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 34105407 - 34105472
Alignment:
23 tagtgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttctt 88  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| ||||||||    
34105407 tagtgatttgtttctagagtttggtgggccgatcacttttgattcgagatcgggagtcagtttctt 34105472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 20970492 - 20970427
Alignment:
23 tagtgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttctt 88  Q
    ||||||||||||||| |||||||||| ||||||||| |||||||||||  ||| ||| ||||||||    
20970492 tagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttctt 20970427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 26216089 - 26216045
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
26216089 agtctggtgggccgatcacttttgattcgagatcgggagtcagtt 26216045  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 26534803 - 26534757
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagat 72  Q
    ||||||| | ||| |||||||||||||||||||||||||||||||||    
26534803 tgatttggtcctgaagtctggtgggccgatcacttttgattcgagat 26534757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 32935423 - 32935365
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||| | ||| ||||||||||||||||| ||||||||||||||||| |||| ||||    
32935423 tgatttggtcctgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagtt 32935365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 34092792 - 34092838
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagat 72  Q
    |||||||| | |||||||||||| |||||||||||||||||||||||    
34092792 tgatttgtctttggagtctggtgagccgatcacttttgattcgagat 34092838  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 20701870 - 20701829
Alignment:
43 ctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    |||||| ||||||||||||||||||||||||| |||||||||    
20701870 ctggtgtgccgatcacttttgattcgagatcgggagttagtt 20701829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 21266127 - 21266168
Alignment:
43 ctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    |||||||||||||| ||||||||||||||||| |||||||||    
21266127 ctggtgggccgatcgcttttgattcgagatcgggagttagtt 21266168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 16510371 - 16510327
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||| ||||||||||||||||||||||||||| |||||| ||||    
16510371 agtctagtgggccgatcacttttgattcgagattgagagtcagtt 16510327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 20499916 - 20499964
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcg 74  Q
    ||||||| ||||||||| |||||| |||||| |||||||||||||||||    
20499916 tgatttgattctggagtatggtggaccgatcgcttttgattcgagatcg 20499964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 34090373 - 34090421
Alignment:
39 gagtctggtgggccgatcacttttgattcgagatcgagagttagtttct 87  Q
    |||||||||||| |||||| |||||||||||||||| |||| |||||||    
34090373 gagtctggtgggtcgatcaattttgattcgagatcgggagtcagtttct 34090421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 7546500 - 7546465
Alignment:
39 gagtctggtgggccgatcacttttgattcgagatcg 74  Q
    ||||||||||| ||||||||||||||||||||||||    
7546500 gagtctggtggaccgatcacttttgattcgagatcg 7546465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 13423482 - 13423516
Alignment:
45 ggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||| |||||||||||||||||||||||||||||    
13423482 ggtggaccgatcacttttgattcgagatcgagagt 13423516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 9239282 - 9239221
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttct 87  Q
    |||||||||| ||||||  ||||||||||||  ||||| |||||||||| |||| |||||||    
9239282 tgatttgtttttggagtacggtgggccgatcgtttttgcttcgagatcgggagtcagtttct 9239221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 3117508 - 3117548
Alignment:
44 tggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    |||||||||||||||||||||||| |||||| |||| ||||    
3117508 tggtgggccgatcacttttgattcaagatcgggagtcagtt 3117548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 9224052 - 9224096
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    |||||||||||| |||| ||||||||||||||||| |||| ||||    
9224052 agtctggtgggctgatcgcttttgattcgagatcgggagtcagtt 9224096  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 4162121 - 4162056
Alignment:
9 agttgaggggcgtctagtgatttgtttctggagtctggtgggccgatcacttttgattcgagatcg 74  Q
    |||||||||| | |||||||||||| |  |||||||||||||||||||||||||||||||||||||    
4162121 agttgaggggtgcctagtgatttgtgttgggagtctggtgggccgatcacttttgattcgagatcg 4162056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 14405195 - 14405248
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||| ||||    
14405195 tgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagt 14405248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 16959993 - 16960037
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||    
16959993 agtctggtgggccgatcgcttttgattcgagatcgagagtcagtt 16960037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 22885203 - 22885159
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
22885203 agtctggtgggccgatcacttttgattcgagatcgggagtcagtt 22885159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 37830996 - 37831128
Alignment:
22 ctagtgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttcttatctcaagctgttttggcgtgtttttgtgtctt 121  Q
    ||||||||||||||||  |||| |||  |||||||||||||||||||| |||   ||| ||||||||  |||||| | ||||| | | |||| |||||||    
37830996 ctagtgatttgtttctaaagtcaggtaagccgatcacttttgattcgaaatctgaagtcagtttcttgactcaagtttttttgccatattttggtgtctt 37831095  T
122 cttctacagactgaggattgatcggtggtggaa 154  Q
    || | ||  || |||||||||| ||||||||||    
37831096 ctacgacgaaccgaggattgattggtggtggaa 37831128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 10524108 - 10524147
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||||||||||||||||||||||||||||||||| ||||    
10524108 agtctggtgggccgatcacttttgattcgagatcgggagt 10524147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 1269494 - 1269528
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcg 74  Q
    |||||||||||||||||||||||||||||||||||    
1269494 agtctggtgggccgatcacttttgattcgagatcg 1269528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 8520396 - 8520446
Alignment:
23 tagtgatttgtttctggagtctggtgggccgatcacttttgattcgagatc 73  Q
    ||||||||||||||| ||||||| ||| || ||||||||||||||||||||    
8520396 tagtgatttgtttctagagtctgatggaccaatcacttttgattcgagatc 8520446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 23665486 - 23665440
Alignment:
28 atttgtttctggagtctggtgggccgatcacttttgattcgagatcg 74  Q
    |||||| || ||||||| |||||||||||||||||||||||||||||    
23665486 atttgtatcgggagtctagtgggccgatcacttttgattcgagatcg 23665440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 7874288 - 7874341
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||||| ||||  ||||||||||| ||||||||||||||||||||||| ||||    
7874288 tgatttggttctaaagtctggtgggtcgatcacttttgattcgagatcgggagt 7874341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 4471930 - 4471978
Alignment:
36 ctggagtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||||| | ||||||||||||||| |||| ||||    
4471930 ctggagtctggtgggccgatcgcctttgattcgagatcgggagtcagtt 4471978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 39338935 - 39338891
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||||    
39338935 agtctggtgggccgatcgcttttgattcgagatcgggagtcagtt 39338891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 14106594 - 14106555
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    |||||||||||||||||||||||||||| |||||| ||||    
14106594 agtctggtgggccgatcacttttgattcaagatcgggagt 14106555  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 15126480 - 15126441
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    |||||||||||||||||| |||||||||||||||| ||||    
15126480 agtctggtgggccgatcatttttgattcgagatcgggagt 15126441  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 23650384 - 23650435
Alignment:
28 atttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||| |||| ||||||||||||| |||| ||||||||||||||||| ||||    
23650384 atttggttctagagtctggtgggctgatcgcttttgattcgagatcgggagt 23650435  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 27739986 - 27740025
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||||||||||||||| |||||||||| |||||||||||    
27739986 agtctggtgggccgatcgcttttgattcaagatcgagagt 27740025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 34143140 - 34143089
Alignment:
23 tagtgatttgtttctggagtctggtgggccgatcacttttgattcgagatcg 74  Q
    ||||||||| ||| |||||||||||| |||||||||||||| ||| ||||||    
34143140 tagtgatttttttttggagtctggtgagccgatcacttttgcttctagatcg 34143089  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 10173648 - 10173614
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcg 74  Q
    ||||| |||||||||||||||||||||||||||||    
10173648 agtctagtgggccgatcacttttgattcgagatcg 10173614  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 9560854 - 9560813
Alignment:
44 tggtgggccgatcacttttgattcgagatcgagagttagttt 85  Q
    |||||| |||||||||||||||||||||||| ||| ||||||    
9560854 tggtggaccgatcacttttgattcgagatcgggagctagttt 9560813  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 36276255 - 36276202
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||||| || ||||||||||||||| | || ||||||||||||||||| ||||    
36276255 tgatttggttatggagtctggtgggctgttcgcttttgattcgagatcgggagt 36276202  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 17105408 - 17105460
Alignment:
26 tgatttgtttctggagtctggtgggccgatcac-ttttgattcgagatcgaga 77  Q
    ||||||| | ||| |||||| |||||||||||| |||||||||||||||||||    
17105408 tgatttggtactgaagtctgatgggccgatcactttttgattcgagatcgaga 17105460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 33788702 - 33788670
Alignment:
40 agtctggtgggccgatcacttttgattcgagat 72  Q
    ||||||||||||||||| |||||||||||||||    
33788702 agtctggtgggccgatcgcttttgattcgagat 33788670  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 15840995 - 15840934
Alignment:
27 gatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttctt 88  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||| |||| ||||||||    
15840995 gatttgtttctagagtctggtgggctgatcacttttgattcgagatcgggagtcagtttctt 15840934  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 46692889 - 46692845
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
46692889 agtctggtgggccgatcacttttgattcgagatcgggagttagtt 46692845  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 30655565 - 30655619
Alignment:
34 ttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttctt 88  Q
    ||||||||||| ||||||||||| ||||||||||||||||| |||| ||||||||    
30655565 ttctggagtctagtgggccgatcgcttttgattcgagatcgggagtcagtttctt 30655619  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 7857650 - 7857703
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||| ||||    
7857650 tgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagt 7857703  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 27031924 - 27031871
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||||| ||||  ||||| ||||||||||||||||||||||||||||||||||    
27031924 tgatttggttctaaagtctagtgggccgatcacttttgattcgagatcgagagt 27031871  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 41403085 - 41403020
Alignment:
23 tagtgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttctt 88  Q
    ||||||||||||||| |||||||||| ||||||||| |||||||||||  ||| ||| ||||||||    
41403085 tagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttctt 41403020  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 46814551 - 46814498
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||| ||||    
46814551 tgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagt 46814498  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 19598647 - 19598691
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||    
19598647 agtctggtgggccgatcgcttttgattcgagatcgagagtcagtt 19598691  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 31585830 - 31585786
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
31585830 agtctggtgggccgatcacttttgattcgagatcgggagtcagtt 31585786  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 41920463 - 41920507
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
41920463 agtctggtgggccgatcacttttgattcgagatcgggagtcagtt 41920507  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 5459172 - 5459211
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||||||||||||||||||||||||||||||||| ||||    
5459172 agtctggtgggccgatcacttttgattcgagatcgggagt 5459211  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 33034719 - 33034668
Alignment:
37 tggagtctggtgggccgatcacttttgattcgagatcgagagttagtttctt 88  Q
    |||||||||||||| ||||||||| |||||||||||||| ||| ||||||||    
33034719 tggagtctggtgggtcgatcacttctgattcgagatcgaaagtcagtttctt 33034668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 22200005 - 22200058
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    |||||||  ||||||||||| ||| ||||||||||||||||| |||||||||||    
22200005 tgatttgactctggagtctgatggaccgatcacttttgattcaagatcgagagt 22200058  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 24658926 - 24658979
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||||| ||||  ||||||||||||| ||||||||||||||||||||| ||||    
24658926 tgatttggttctaaagtctggtgggccaatcacttttgattcgagatcgggagt 24658979  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 32876713 - 32876648
Alignment:
23 tagtgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttctt 88  Q
    ||||||||||||| |||||| ||||||| |||  |||||||||||||||||| |||| | ||||||    
32876713 tagtgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcgggagtcactttctt 32876648  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 17033597 - 17033641
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||||||||| ||||||||| |||| ||||    
17033597 agtctggtgggccgatcacttttgaatcgagatcgggagtcagtt 17033641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 38544808 - 38544764
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||||    
38544808 agtctggtgggccgatcgcttttgattcgagatcgggagtcagtt 38544764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 4651791 - 4651830
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
4651791 agtctggggggccgatcacttttgattcgagatcgggagt 4651830  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 38564881 - 38564960
Alignment:
9 agttgaggggcgtctagtgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttctt 88  Q
    |||||||||| | ||  |||||||| |  ||||||| ||||||||||| ||||||||||||||||| ||| | |||||||    
38564881 agttgaggggtgccttttgatttgtgttaggagtctcgtgggccgatcgcttttgattcgagatcgggagctggtttctt 38564960  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 6583286 - 6583252
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcg 74  Q
    |||||||||| ||||||||||||||||||||||||    
6583286 agtctggtggaccgatcacttttgattcgagatcg 6583252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 24684548 - 24684514
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcg 74  Q
    ||||||||||||||||||||||| |||||||||||    
24684548 agtctggtgggccgatcacttttaattcgagatcg 24684514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 27905423 - 27905456
Alignment:
40 agtctggtgggccgatcacttttgattcgagatc 73  Q
    |||||||||| |||||||||||||||||||||||    
27905423 agtctggtggaccgatcacttttgattcgagatc 27905456  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 5389483 - 5389447
Alignment:
48 gggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||||||||||| |||| ||||    
5389483 gggccgatcacttttgattcgagatcgggagtcagtt 5389447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 9081589 - 9081541
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcg 74  Q
    ||||||| ||||||||||  ||||  |||||||||||||||||||||||    
9081589 tgatttgcttctggagtcacgtggatcgatcacttttgattcgagatcg 9081541  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 9313359 - 9313315
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||| |||||| |||||||||||||||||||||| |||| ||||    
9313359 agtctagtgggctgatcacttttgattcgagatcgggagtcagtt 9313315  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 27102210 - 27102246
Alignment:
48 gggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||||||||||| |||| ||||    
27102210 gggccgatcacttttgattcgagatcgggagtcagtt 27102246  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 28887773 - 28887817
Alignment:
29 tttgtttctggagtctggtgggccgatcacttttgattcgagatc 73  Q
    ||||| || ||||||||||||||||| |||| |||||||||||||    
28887773 tttgtgtcgggagtctggtgggccgaccactcttgattcgagatc 28887817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 30685974 - 30685930
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||| ||||||||||||||||||||| ||||||| |||| ||||    
30685974 agtcttgtgggccgatcacttttgatttgagatcgggagtcagtt 30685930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 46603403 - 46603447
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    |||||||||||||  || |||||||||||||||||||||| ||||    
46603403 agtctggtgggccattcgcttttgattcgagatcgagagtcagtt 46603447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 3825 - 3889
Alignment:
24 agtgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttctt 88  Q
    |||||||||||| | ||||||||||||||||||| |||||||||||||||| |||| ||||||||    
3825 agtgatttgtttttagagtctggtgggccgatcaattttgattcgagatcgggagtcagtttctt 3889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 8126 - 8172
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagat 72  Q
    |||||||| | |||||||||||| |||||||||||||||||||||||    
8126 tgatttgtctttggagtctggtgagccgatcacttttgattcgagat 8172  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 46262191 - 46262141
Alignment:
38 ggagtctggtgggccgatcacttttgattcgagatcgagagttagtttctt 88  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||    
46262191 ggagtctggtgggccgatcacttttgattcgagatcgggagctagtttctt 46262141  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 27993620 - 27993561
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagttt 85  Q
    |||||||| || |||||||||||| |||||||||||||||||||||||| ||| ||||||    
27993620 tgatttgtgtcgggagtctggtggaccgatcacttttgattcgagatcgggagctagttt 27993561  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 6584906 - 6584959
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||| ||||    
6584906 tgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagt 6584959  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 25153217 - 25153266
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcga 75  Q
    |||||||| || |||||||||||| |||||||||||||||||||||||||    
25153217 tgatttgtgtcgggagtctggtggaccgatcacttttgattcgagatcga 25153266  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 38485561 - 38485606
Alignment:
34 ttctggagtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||    
38485561 ttctgaagtctggtgggccgatcacttttgattcgagatcgggagt 38485606  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 3478367 - 3478407
Alignment:
44 tggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||||||||||||||| |||||||||    
3478367 tggtgggccgatcacttttgattcgagatcgggagttagtt 3478407  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 13311850 - 13311894
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
13311850 agtctggtgggccgatcacttttgattcgagatcgggagtcagtt 13311894  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 9349760 - 9349799
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||||||||||||||||||||||||||||||||| ||||    
9349760 agtctggtgggccgatcacttttgattcgagatcgggagt 9349799  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 34389973 - 34390012
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||||||||||||||||||||||||||||||||| ||||    
34389973 agtctggtgggccgatcacttttgattcgagatcgggagt 34390012  T

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Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 35206765 - 35206718
Alignment:
38 ggagtctggtgggccgatcacttttgattcgagatcgagagttagttt 85  Q
    |||||||||||||||||||||||||||| |||||||| ||| ||||||    
35206765 ggagtctggtgggccgatcacttttgatccgagatcgggagctagttt 35206718  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 10244195 - 10244237
Alignment:
42 tctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
10244195 tctggtgggccgatcacttttgattcgagatcgggagtcagtt 10244237  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 17802885 - 17802852
Alignment:
41 gtctggtgggccgatcacttttgattcgagatcg 74  Q
    ||||||||||||||||||||||||||||||||||    
17802885 gtctggtgggccgatcacttttgattcgagatcg 17802852  T

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Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 6716806 - 6716762
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    |||||||| |||||||||||||||||||||||||| |||| ||||    
6716806 agtctggttggccgatcacttttgattcgagatcgggagtcagtt 6716762  T

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Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 8745166 - 8745198
Alignment:
42 tctggtgggccgatcacttttgattcgagatcg 74  Q
    |||||||||||||||||||||||||||||||||    
8745166 tctggtgggccgatcacttttgattcgagatcg 8745198  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 38306272 - 38306304
Alignment:
40 agtctggtgggccgatcacttttgattcgagat 72  Q
    |||||||||||||||||||||||||||||||||    
38306272 agtctggtgggccgatcacttttgattcgagat 38306304  T

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Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 42533322 - 42533283
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    |||||||||||| |||||||||||||||||||||| ||||    
42533322 agtctggtgggctgatcacttttgattcgagatcgggagt 42533283  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 2613951 - 2613894
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagt 83  Q
    |||||||  |||||| |||||| |||| |||||||||||||||||||||  |||||||    
2613951 tgatttgagtctggaatctggttggccaatcacttttgattcgagatcggaagttagt 2613894  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 9428175 - 9428142
Alignment:
40 agtctggtgggccgatcacttttgattcgagatc 73  Q
    ||||||||| ||||||||||||||||||||||||    
9428175 agtctggtgagccgatcacttttgattcgagatc 9428142  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 12480901 - 12480941
Alignment:
44 tggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||| ||||||||||||||||| |||| ||||    
12480901 tggtgggccgatcgcttttgattcgagatcgggagtcagtt 12480941  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 33435120 - 33435164
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||| | ||||||||||||||||||||||| |||| ||||    
33435120 agtctggtgagacgatcacttttgattcgagatcgggagtcagtt 33435164  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 41089818 - 41089786
Alignment:
40 agtctggtgggccgatcacttttgattcgagat 72  Q
    |||||||||| ||||||||||||||||||||||    
41089818 agtctggtggaccgatcacttttgattcgagat 41089786  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 30127254 - 30127386
Alignment:
21 tctagtgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtt-tcttatctcaagctgttttggcgtgtttttgtgtc 119  Q
    |||| ||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||| |||| ||||  |||||| | ||| ||| |||||| || ||    
30127254 tctattgatttgtttcgggagtctggtgagccgatcgcttttgattcgagatcgggagtcagttctcttgactcaagttttttaggcttgttttggtctc 30127353  T
120 ttcttctacagactgaggattgatcggtggtgg 152  Q
    |||| | ||| |||  || ||||| ||||||||    
30127354 ttctccaacaaacttggggttgattggtggtgg 30127386  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 34475836 - 34475785
Alignment:
28 atttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||| ||||    
34475836 atttgtttctatagtctggtgggccgatcacttttgattcgagatcgggagt 34475785  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 12220793 - 12220851
Alignment:
157 tgaattggttcagaatttcgactaagttggggtgatgaggtgaggtgttgtctgtggtg 215  Q
    ||||||||||| || ||||| |||||||| ||||||||||||||||||||| |||||||    
12220793 tgaattggttcggagtttcggctaagttgtggtgatgaggtgaggtgttgtttgtggtg 12220851  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 19295942 - 19295853
Alignment:
33 tttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttcttatctcaagctgttttggcgtgtttttgtgtcttct 123  Q
    ||||| |||||||||||||| |||||||||||||||| ||||  ||||||||||||  |||||| | ||| ||| |||||| |||||||||    
19295942 tttcttgagtctggtgggcctatcacttttgattcgatatcggaagttagtttcttgactcaag-tttttgggcttgttttggtgtcttct 19295853  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 20710778 - 20710733
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagttt 85  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||    
20710778 agtctggtgggccgatcacttttgattcgagatcgggagctagttt 20710733  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 7424884 - 7424820
Alignment:
151 ggaagttgaattggttcagaatttcgactaagttggggtgatgaggtgaggtgttgtctgtggtg 215  Q
    ||||| ||| ||||||| |||||||| |||||||| |||||||| |||||||||||| |||||||    
7424884 ggaagctgatttggttcggaatttcggctaagttgtggtgatgatgtgaggtgttgtttgtggtg 7424820  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 17550968 - 17551012
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
17550968 agtctggtgggccgatcacttttgattcgagatcgggagtcagtt 17551012  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 19176513 - 19176557
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
19176513 agtctggtgggccgatcacttttgattcgagatcgggagtcagtt 19176557  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 24099411 - 24099363
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcg 74  Q
    |||||||||| | ||||||||||||||||||||||||||||||| ||||    
24099411 tgatttgtttatagagtctggtgggccgatcacttttgattcgatatcg 24099363  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 14879446 - 14879485
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||||||||||||||||||||||||||||||||| ||||    
14879446 agtctggtgggccgatcacttttgattcgagatcgggagt 14879485  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 45398807 - 45398846
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    |||||||||| |||||||||||||||||||||||||||||    
45398807 agtctggtggaccgatcacttttgattcgagatcgagagt 45398846  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 823498 - 823461
Alignment:
47 tgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||||||||||||||||| ||||    
823498 tgggccgatcacttttgattcgagatcgagagtcagtt 823461  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 14755335 - 14755291
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    |||||||||||||||||||||||||||| |||||| |||| ||||    
14755335 agtctggtgggccgatcacttttgattcaagatcgggagtcagtt 14755291  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 23328434 - 23328378
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttag 82  Q
    ||||||| ||||  ||| |||||| |||||||||||||||||||||||| |||||||    
23328434 tgatttggttctaaagtttggtggaccgatcacttttgattcgagatcgggagttag 23328378  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 24712635 - 24712683
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcg 74  Q
    ||||||||||||||||| |||||||||| ||| |||| |||||||||||    
24712635 tgatttgtttctggagtatggtgggccggtcattttttattcgagatcg 24712683  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 43012386 - 43012430
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    |||||||||| |||||||||||||||||||||||| |||| ||||    
43012386 agtctggtggcccgatcacttttgattcgagatcgggagtcagtt 43012430  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 47945717 - 47945761
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||    
47945717 agtccggtgggccgatcacttttgattcgagatcgggagtcagtt 47945761  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 40023642 - 40023603
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    |||||||||| |||||||||||||||||||||||| ||||    
40023642 agtctggtggaccgatcacttttgattcgagatcgggagt 40023603  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 1652950 - 1652912
Alignment:
46 gtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||||||||||||  |||||||||    
1652950 gtgggccgatcacttttgattcgagatcaggagttagtt 1652912  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 51065944 - 51065886
Alignment:
9 agttgaggggcgtct-agtgatttgtttctggagtctggtgggccgatcacttttgatt 66  Q
    ||||||||||| ||| ||||||||||||  |||||||||||| |||||| |||||||||    
51065944 agttgaggggcttcttagtgatttgttttgggagtctggtggaccgatcgcttttgatt 51065886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 24992002 - 24991953
Alignment:
23 tagtgatttgtttctggagtctggtgggccgatcacttttgattcgagat 72  Q
    ||||||||||||| |||| | ||||||||||| | |||||||||||||||    
24992002 tagtgatttgtttttggattatggtgggccgaccgcttttgattcgagat 24991953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 5556581 - 5556625
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||| ||||| ||||||||||||||||| |||| ||||    
5556581 agtctggtggggcgatcgcttttgattcgagatcgggagtcagtt 5556625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 9584123 - 9584079
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||  ||||||||||||||||||||||| |||| ||||    
9584123 agtctggtggatcgatcacttttgattcgagatcgggagtcagtt 9584079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 33144019 - 33143975
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||  ||||||||||||||||||||||| |||| ||||    
33144019 agtctggtggatcgatcacttttgattcgagatcgggagtcagtt 33143975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 37123397 - 37123425
Alignment:
44 tggtgggccgatcacttttgattcgagat 72  Q
    |||||||||||||||||||||||||||||    
37123397 tggtgggccgatcacttttgattcgagat 37123425  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 39021342 - 39021302
Alignment:
44 tggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||||||||||| ||| |||| ||||    
39021342 tggtgggccgatcacttttgattcgaggtcgggagtcagtt 39021302  T

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Target: scaffold0236 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 10452 - 10358
Alignment:
59 ttttgattcgagatcgagagttagtttcttatctcaagctgttttggcgtgtttttgtgtcttcttctacagactgaggattgatcggtggtggaa 154  Q
    ||||||||||||||||||||| ||||||||  |||||| || |||||| |||||| |||||||||   ||| || |||||||||| ||||||||||    
10452 ttttgattcgagatcgagagtcagtttcttgactcaagttg-tttggcttgttttggtgtcttctctaacaaaccgaggattgattggtggtggaa 10358  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 35062454 - 35062512
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||| ||||| |||||||||||||||||  ||||||||||||||||||||| ||||    
35062454 tgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgagagtcagtt 35062512  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 24995465 - 24995421
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
24995465 agtctggtgggccgatcacttttgattcgagatcgggagtcagtt 24995421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 31207432 - 31207388
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
31207432 agtctggtgggccgatcacttttgattcgagatcgggagtcagtt 31207388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 34389075 - 34389031
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||    
34389075 agtctggtgggccgatcacttttgattcgagatcaagagtcagtt 34389031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 33967335 - 33967370
Alignment:
38 ggagtctggtgggccgatcacttttgattcgagatc 73  Q
    ||||||||||||||||||||||||||||||||||||    
33967335 ggagtctggtgggccgatcacttttgattcgagatc 33967370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 10552265 - 10552323
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||| ||||| ||||||||||||||||| |||||||||| |||||| |||| ||||    
10552265 tgatttggttctgaagtctggtgggccgatcgcttttgattctagatcgggagtcagtt 10552323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 15821463 - 15821410
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||||| ||||  |||||||||||| |||||||||||||||||||||| ||||    
15821463 tgatttggttctaaagtctggtgggctgatcacttttgattcgagatcgggagt 15821410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 40531243 - 40531288
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagttt 85  Q
    |||||| |||||||||||||||||||||||||||| ||| ||||||    
40531243 agtctgatgggccgatcacttttgattcgagatcgggagctagttt 40531288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 544434 - 544386
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcg 74  Q
    |||||||| || ||||||||||||| |||||||||| ||||||||||||    
544434 tgatttgtgtcgggagtctggtgggtcgatcactttagattcgagatcg 544386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 15906697 - 15906741
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||||    
15906697 agtctggtgggccgatcacatttgattcgagatcgggagtcagtt 15906741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 16055285 - 16055238
Alignment:
25 gtgatttgtttctggagtctggtgggccgatcacttttgattcgagat 72  Q
    ||||||| ||||| ||||||||||||||||| | ||||||||||||||    
16055285 gtgatttttttctagagtctggtgggccgataaattttgattcgagat 16055238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 32066365 - 32066326
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    |||||||||||||||||||||||||||||| |||| ||||    
32066365 agtctggtgggccgatcacttttgattcgaaatcgggagt 32066326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 41893470 - 41893407
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtttcttatctcaagctgtttt 103  Q
    ||||||||||||| | ||||||||||||||||||| |||| ||||  || ||||||| ||||||    
41893470 agtctggtgggccaaccacttttgattcgagatcgggagtcagttctttgtctcaagttgtttt 41893407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 30236212 - 30236154
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||| || || ||||||||||| ||||| ||||||||||||||||| |||| ||||    
30236212 tgatttggttttgaagtctggtgggacgatcgcttttgattcgagatcgggagtcagtt 30236154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 36630848 - 36630882
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcg 74  Q
    ||||||||||||||||||||||| |||||||||||    
36630848 agtctggtgggccgatcacttttaattcgagatcg 36630882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 32945787 - 32945734
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||||| ||||| ||| | |||||| |||||||||||||||||||||| ||||    
32945787 tgatttgattctgaagtatagtgggctgatcacttttgattcgagatcgggagt 32945734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 5221922 - 5221866
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttag 82  Q
    ||||||| || ||||| |||||||||||||| |||||||||||| |||  |||||||    
5221922 tgatttggttttggaggctggtgggccgatcgcttttgattcgaaatcaggagttag 5221866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 9519510 - 9519554
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||| |||||||||||| |||||||||||||||| |||| ||||    
9519510 agtctagtgggccgatcagttttgattcgagatcgggagtcagtt 9519554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 17657068 - 17657028
Alignment:
44 tggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||| ||||||||||||||||||||||| |||| ||||    
17657068 tggtgggtcgatcacttttgattcgagatcgggagtcagtt 17657028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 17720905 - 17720861
Alignment:
36 ctggagtctggtgggccgatcacttttgattcgagatcgagagtt 80  Q
    ||||| |||||||||||||| ||||||| || |||||||||||||    
17720905 ctggattctggtgggccgattacttttgctttgagatcgagagtt 17720861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 37986928 - 37986884
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||| |||| |||||||||||||||| |||| ||||    
37986928 agtctggtgggccaatcatttttgattcgagatcgggagtcagtt 37986884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 6342 - 6277
Alignment:
23 tagtgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttctt 88  Q
    ||||||||||||||| |||||||||| ||||||||| |||||||||||  ||| ||| ||||||||    
6342 tagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttctt 6277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 31250 - 31315
Alignment:
23 tagtgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttctt 88  Q
    ||||||||||||||| |||||||||| ||||||||| |||||||||||  ||| ||| ||||||||    
31250 tagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttctt 31315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 25341707 - 25341751
Alignment:
38 ggagtctggtgggccgatcacttttgattcgagatcgagagttag 82  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||    
25341707 ggagtctggtgggccgatcacttttgatttgagattgagagttag 25341751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 33258952 - 33258908
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||||||||||||||||||  |||||||||    
33258952 agtctggtgggccgatcacttttgattcgagatcaggagttagtt 33258908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 34378109 - 34378153
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
34378109 agtctggtgggccgatcacttttgattcgagatcgggagtcagtt 34378153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 12046249 - 12046300
Alignment:
23 tagtgatttgtttctggagtctggtgggccgatcacttttgattcgagatcg 74  Q
    |||||||||| ||| | ||| |||||||||||||||||||||||||||||||    
12046249 tagtgatttgattcggaagtttggtgggccgatcacttttgattcgagatcg 12046300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 13954304 - 13954265
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||||||||||||||||||||||||||||||||| ||||    
13954304 agtctggtgggccgatcacttttgattcgagatcgggagt 13954265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 28765686 - 28765624
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttctt 88  Q
    |||||| ||||| || ||||||||   ||||||||||||||||||||||||||| ||||||||    
28765686 tgatttttttctagattctggtggattgatcacttttgattcgagatcgagagtcagtttctt 28765624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 39184256 - 39184223
Alignment:
41 gtctggtgggccgatcacttttgattcgagatcg 74  Q
    ||||||||||||||||||||||||||||||||||    
39184256 gtctggtgggccgatcacttttgattcgagatcg 39184223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 7195309 - 7195265
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||| ||||||||||||||||||||||||| |||| ||||    
7195309 agtctggtgagccgatcacttttgattcgagatcgggagtcagtt 7195265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 7392101 - 7392057
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    |||||||||| |||||||||||||||||||||||| |||| ||||    
7392101 agtctggtggaccgatcacttttgattcgagatcgggagtcagtt 7392057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 25992018 - 25992062
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||| ||| |||||||||||||||||||||| ||||    
25992018 agtctggtgggccaatcgcttttgattcgagatcgagagtcagtt 25992062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 18557534 - 18557592
Alignment:
26 tgatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagttt 85  Q
    |||||||| || |||||||  ||||||||||||||||||||||||||| |||| ||||||    
18557534 tgatttgtgtcgggagtcta-tgggccgatcacttttgattcgagatccagagctagttt 18557592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 26046034 - 26045991
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagt 83  Q
    |||||||||  |||||||||||||||||||||||| ||||||||    
26046034 agtctggtgaaccgatcacttttgattcgagatcgggagttagt 26045991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 18593260 - 18593298
Alignment:
46 gtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    |||||| |||||||||||||||||||||| |||||||||    
18593260 gtgggcagatcacttttgattcgagatcgggagttagtt 18593298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 19394 - 19428
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcg 74  Q
    |||||||||||||||||||||||||||||||||||    
19394 agtctggtgggccgatcacttttgattcgagatcg 19428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 42208 - 42174
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcg 74  Q
    |||||||||||||||||||||||||||||||||||    
42208 agtctggtgggccgatcacttttgattcgagatcg 42174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 1087 - 1043
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||||    
1087 agtctggtgggccgatcgcttttgattcgagatcgggagtcagtt 1043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 35841 - 35802
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagt 79  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
35841 agtctagtgggccgatcacttttgattcgagatcgggagt 35802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 30659 - 30599
Alignment:
27 gatttgtttctggagtctggtgggccgatcacttttgattcgagatcgagagttagtttct 87  Q
    ||||||||| |||||||| ||| ||| |||| ||||| |||||||| | ||||||||||||    
30659 gatttgtttatggagtctagtgtgccaatcaattttgcttcgagattgggagttagtttct 30599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 36718 - 36762
Alignment:
40 agtctggtgggccgatcacttttgattcgagatcgagagttagtt 84  Q
    ||||||| |||| |||||||||||||||||||||| |||| ||||    
36718 agtctggcgggctgatcacttttgattcgagatcgggagtcagtt 36762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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