View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1306_low_48 (Length: 221)

Name: NF1306_low_48
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1306_low_48
NF1306_low_48
[»] chr8 (16 HSPs)
chr8 (1-148)||(28846564-28846711)
chr8 (6-146)||(13152478-13152621)
chr8 (6-148)||(24333662-24333807)
chr8 (6-148)||(27190719-27190864)
chr8 (4-146)||(14446779-14446923)
chr8 (21-148)||(9256355-9256482)
chr8 (58-146)||(16532715-16532806)
chr8 (58-148)||(21958512-21958605)
chr8 (58-148)||(30791540-30791633)
chr8 (80-148)||(10467786-10467857)
chr8 (87-146)||(10014519-10014579)
chr8 (98-145)||(42446961-42447008)
chr8 (119-148)||(32342880-32342909)
chr8 (119-148)||(32355367-32355396)
chr8 (119-148)||(32359486-32359515)
chr8 (119-148)||(32372022-32372051)
[»] chr5 (12 HSPs)
chr5 (6-148)||(3055430-3055575)
chr5 (4-148)||(11852661-11852808)
chr5 (3-145)||(23244655-23244800)
chr5 (1-148)||(8785726-8785875)
chr5 (6-148)||(27168885-27169022)
chr5 (62-148)||(1280382-1280471)
chr5 (58-148)||(203851-203943)
chr5 (58-148)||(26540737-26540830)
chr5 (76-146)||(22712983-22713048)
chr5 (77-148)||(22541905-22541979)
chr5 (104-145)||(2228964-2229005)
chr5 (119-148)||(19519024-19519053)
[»] chr4 (8 HSPs)
chr4 (3-148)||(31944561-31944709)
chr4 (32-145)||(4325387-4325502)
chr4 (58-148)||(12211308-12211401)
chr4 (58-148)||(27364883-27364976)
chr4 (58-148)||(53693116-53693209)
chr4 (58-148)||(55464742-55464835)
chr4 (58-148)||(42843707-42843800)
chr4 (100-145)||(3074414-3074459)
[»] chr7 (14 HSPs)
chr7 (6-146)||(43727944-43728087)
chr7 (6-148)||(9230349-9230494)
chr7 (9-148)||(23179967-23180109)
chr7 (5-96)||(23804635-23804726)
chr7 (58-148)||(27387388-27387481)
chr7 (58-148)||(45197644-45197736)
chr7 (58-148)||(19399978-19400071)
chr7 (58-148)||(26493796-26493889)
chr7 (68-148)||(18375416-18375499)
chr7 (42-148)||(8638598-8638707)
chr7 (58-148)||(38575371-38575464)
chr7 (4-60)||(5288014-5288070)
chr7 (10-74)||(25024535-25024599)
chr7 (8-63)||(24276397-24276452)
[»] scaffold0178 (1 HSPs)
scaffold0178 (5-148)||(17687-17833)
[»] chr1 (13 HSPs)
chr1 (6-148)||(14498846-14498990)
chr1 (1-146)||(48606696-48606844)
chr1 (3-145)||(9637067-9637211)
chr1 (6-148)||(30559087-30559232)
chr1 (18-148)||(52753899-52754032)
chr1 (43-148)||(25017371-25017479)
chr1 (42-148)||(32379937-32380043)
chr1 (43-148)||(40864801-40864909)
chr1 (58-148)||(17127439-17127532)
chr1 (58-148)||(26273011-26273104)
chr1 (98-148)||(35949060-35949110)
chr1 (58-148)||(21973870-21973963)
chr1 (98-148)||(30054864-30054914)
[»] chr6 (10 HSPs)
chr6 (3-148)||(12180607-12180755)
chr6 (11-142)||(11970913-11971047)
chr6 (58-148)||(24074412-24074505)
chr6 (65-148)||(25599159-25599245)
chr6 (87-146)||(3050894-3050954)
chr6 (41-148)||(25340428-25340538)
chr6 (108-148)||(30621226-30621266)
chr6 (58-148)||(32442056-32442146)
chr6 (103-146)||(1296557-1296600)
chr6 (18-60)||(8035438-8035480)
[»] chr3 (9 HSPs)
chr3 (3-148)||(15667918-15668066)
chr3 (3-146)||(3856960-3857106)
chr3 (1-148)||(51261922-51262072)
chr3 (58-148)||(43137127-43137220)
chr3 (58-148)||(31989029-31989122)
chr3 (58-148)||(53710398-53710491)
chr3 (58-148)||(24908475-24908568)
chr3 (58-148)||(37381951-37382044)
chr3 (77-146)||(43585836-43585908)
[»] chr2 (9 HSPs)
chr2 (9-148)||(12539525-12539666)
chr2 (6-142)||(34317555-34317694)
chr2 (62-145)||(35649745-35649831)
chr2 (58-148)||(19951913-19952006)
chr2 (58-148)||(33453270-33453363)
chr2 (98-148)||(13308759-13308809)
chr2 (58-148)||(22483549-22483642)
chr2 (58-148)||(34526352-34526445)
chr2 (58-146)||(22464670-22464761)
[»] scaffold0002 (1 HSPs)
scaffold0002 (6-145)||(435435-435582)
[»] scaffold0019 (1 HSPs)
scaffold0019 (58-148)||(134936-135029)
[»] scaffold0007 (1 HSPs)
scaffold0007 (58-148)||(259918-260011)
[»] scaffold0015 (1 HSPs)
scaffold0015 (58-148)||(214243-214336)
[»] scaffold0198 (1 HSPs)
scaffold0198 (98-148)||(1439-1489)
[»] scaffold0168 (1 HSPs)
scaffold0168 (58-148)||(15814-15907)
[»] scaffold0012 (1 HSPs)
scaffold0012 (58-146)||(197105-197196)


Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 28846564 - 28846711
Alignment:
Q  1 aaccctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatgtac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28846564 aaccctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatgtac 28846663  T
Q  101 atcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28846664 atcgagcgggagatattcaagtcacttgatgatgttgatattattcga 28846711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 6 - 146
Target Start/End: Complemental strand, 13152621 - 13152478
Alignment:
Q  6 tgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gtacat 102  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    |||||    
T  13152621 tgtcaaaaagctagtaaaataatcttataagcccgtgagaaagaattgttaccaacatgatcaacgctgtgtggttcaatgacttgatgatatgttacat 13152522  T
Q  103 cgagcgggagatattcaagtcacttgatgatgttgatattattc 146  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  13152521 cgagcgggagatattcaagtcatttgatgatgttggtattattc 13152478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 24333662 - 24333807
Alignment:
Q  6 tgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatgt---acat 102  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |   |||     
T  24333662 tgtcaataagctagtaaaataatcttataagcccgtgagaaagaattgttaccaacaagatcaacgatgtatgattcaatgactttatgatatgttacac 24333761  T
Q  103 cgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
     ||||||||||||||||||||||||||||||||| |||||||||||    
T  24333762 tgagcgggagatattcaagtcacttgatgatgttaatattattcga 24333807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 27190719 - 27190864
Alignment:
Q  6 tgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gtacat 102  Q
    |||||| |||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    | ||     
T  27190719 tgtcaacaagctagtaaaataatcttataagcccgcgagaaagaattgttacaaacaagatcaacgatgtgtggttcaatgacttgatgatatgttgcac 27190818  T
Q  103 cgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    | ||||||||||||||||||||||||||||||||||||||| ||||    
T  27190819 ctagcgggagatattcaagtcacttgatgatgttgatattactcga 27190864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 14446779 - 14446923
Alignment:
Q  4 cctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gtac 100  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    |||    
T  14446779 cctgtcaataagctagtaaaataatcttataagtctgcgagaaagaattgttacc-acaagatcaacgatttgtggttcaatgacttgatgatatgttac 14446877  T
Q  101 atcgagcgggagatattcaagtcacttgatgatgttgatattattc 146  Q
    | | || | |||||||||||||||||||||||||||||||||||||    
T  14446878 accaagagagagatattcaagtcacttgatgatgttgatattattc 14446923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 9256355 - 9256482
Alignment:
Q  21 aaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatatt 117  Q
    ||||||||||||||||  ||||||||||||||   ||||| | |||||| ||||||||||| |||||||||||||| |   |||||||||||||||||||    
T  9256355 aaaataatcttataagcacgtgagaaagaatt---accaatatgatcaatgatgtgtggtttaatgacttgatgatatgttacatcgagcgggagatatt 9256451  T
Q  118 caagtcacttgatgatgttgatattattcga 148  Q
    |||||||||||||||||||||||| ||||||    
T  9256452 caagtcacttgatgatgttgatataattcga 9256482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 16532806 - 16532715
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgat---gtacatcgagcgggagatattcaagtcacttgatgatgttgatattattc 146  Q
    |||||||||||||||||||||||||||||||||||||||    || | | || | |||||||||||||||||||||||||||||||||||||    
T  16532806 caacaagatcaacgatgtgtggttcaatgacttgatgatatgttataccaagtgagagatattcaagtcacttgatgatgttgatattattc 16532715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 21958512 - 21958605
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||| || ||||||| |||||||||||||| |   ||| ||||| |||||||||| |||||||||||||||||||||||||||||    
T  21958512 caacaagatcaacaatatgtggttgaatgacttgatgatatgttacaccgagcaggagatattcgagtcacttgatgatgttgatattattcga 21958605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 30791633 - 30791540
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||  ||| ||||||||||||||||||||| |   ||| ||||||||||||||||||||||||||||||  ||||||||||||||    
T  30791633 caacaagatcaagaatgagtggttcaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgacattgatattattcga 30791540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 10467786 - 10467857
Alignment:
Q  80 ttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||||||| |   ||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  10467786 ttcaatgacttgatgatatgttacatcgagcgggagataatcaagtcatttgatgatgttgatattattcga 10467857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 10014579 - 10014519
Alignment:
Q  87 acttgatgatgt-acatcgagcgggagatattcaagtcacttgatgatgttgatattattc 146  Q
    |||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  10014579 acttgatgatgttacaccgagcggaagatattcatgtcacttgatgatgttgatattattc 10014519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 42446961 - 42447008
Alignment:
Q  98 tacatcgagcgggagatattcaagtcacttgatgatgttgatattatt 145  Q
    |||||||||||| |||||||||||||||||||||| ||| ||||||||    
T  42446961 tacatcgagcggaagatattcaagtcacttgatgacgtttatattatt 42447008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 148
Target Start/End: Original strand, 32342880 - 32342909
Alignment:
Q  119 aagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||||||||||||||||||||    
T  32342880 aagtcacttgatgatgttgatattattcga 32342909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 148
Target Start/End: Original strand, 32355367 - 32355396
Alignment:
Q  119 aagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||||||||||||||||||||    
T  32355367 aagtcacttgatgatgttgatattattcga 32355396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 148
Target Start/End: Original strand, 32359486 - 32359515
Alignment:
Q  119 aagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||||||||||||||||||||    
T  32359486 aagtcacttgatgatgttgatattattcga 32359515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 148
Target Start/End: Original strand, 32372022 - 32372051
Alignment:
Q  119 aagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||||||||||||||||||||    
T  32372022 aagtcacttgatgatgttgatattattcga 32372051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 3055430 - 3055575
Alignment:
Q  6 tgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gtacat 102  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    |||||    
T  3055430 tgtcaataagctagtaaaataatcttataagcccgtgagaaagaattgttaccaacatgatcaacgatgtgtggttcaatgacttgatgatatgttacat 3055529  T
Q  103 cgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  3055530 cgagcgggagatattcaagtcatttgatgatgttgatattattcga 3055575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 11852661 - 11852808
Alignment:
Q  4 cctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gtac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||    |||    
T  11852661 cctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattattaccaacaagatgaaagatgtgtggttcaatgacttgatgatatgttac 11852760  T
Q  101 atcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    | ||| ||||||||||| || |||||||||||||||||||||||||||    
T  11852761 accgaacgggagatatttaactcacttgatgatgttgatattattcga 11852808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 23244800 - 23244655
Alignment:
Q  3 ccctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gta 99  Q
    |||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    ||    
T  23244800 ccctgtcaataagctagtaaaataatcttataagccaatgagaaagaattgttaccaacaagatcaacgatgtgtcgttcaatgacttgatgatatgtta 23244701  T
Q  100 catcgagcgggagatattcaagtcacttgatgatgttgatattatt 145  Q
      |||||||| || ||||| ||||||||||||||||||||||||||    
T  23244700 tgtcgagcggaagttattctagtcacttgatgatgttgatattatt 23244655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 8785726 - 8785875
Alignment:
Q  1 aaccctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---g 97  Q
    ||||| || ||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||        
T  8785726 aaccccgttaataagctagtaaaataatcttataag-caatgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgataatatat 8785824  T
Q  98 tacatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    |||||| |||||||||||||||| ||| |||||||| ||||||||||||||    
T  8785825 tacatcaagcgggagatattcaattcagttgatgatattgatattattcga 8785875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 148
Target Start/End: Complemental strand, 27169022 - 27168885
Alignment:
Q  6 tgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatgtacatcga 105  Q
    ||||||||||||||||||||||||||||||| || ||||||| ||||||||| ||||||||||||||||||||||||||| |  ||      |||| |||    
T  27169022 tgtcaataagctagtaaaataatcttataagcccatgagaaataattgttacaaacaagatcaacgatgtgtggttcaataatatg-----ttacaccga 27168928  T
Q  106 gcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  27168927 gcgggagatattcaagtcacttgataatgttgatattattcga 27168885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 1280382 - 1280471
Alignment:
Q  62 aagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||| |||||||||||||||| |||||||| |   ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1280382 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcga 1280471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 203851 - 203943
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||| ||||||  |  |||||||||||||| |   ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  203851 caacaagatcaacaatgtgta-taaaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcga 203943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 26540830 - 26540737
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||| ||| ||| |||||| ||||| |||||||| |   ||| |||||||||||||||||| |||||||||||  ||||||||||||||    
T  26540830 caacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcga 26540737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 22713048 - 22712983
Alignment:
Q  76 gtggttcaatgacttgatgatgtacatcgagcgggagatattcaagtcacttgatgatgttgatattattc 146  Q
    ||||||||||||||||||||| |     ||||||| |||||||| ||||||||||||||||||||||||||    
T  22713048 gtggttcaatgacttgatgatat-----gagcgggggatattcatgtcacttgatgatgttgatattattc 22712983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 22541905 - 22541979
Alignment:
Q  77 tggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||| |||||||||||||| |   ||||||| ||| |||||||||||||||| ||||||||| |||||||||||    
T  22541905 tggttgaatgacttgatgatatgttacatcgaacggaagatattcaagtcactcgatgatgttaatattattcga 22541979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 2228964 - 2229005
Alignment:
Q  104 gagcgggagatattcaagtcacttgatgatgttgatattatt 145  Q
    |||||| ||||||| |||||| ||||||||||||||||||||    
T  2228964 gagcggaagatatttaagtcatttgatgatgttgatattatt 2229005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 148
Target Start/End: Complemental strand, 19519053 - 19519024
Alignment:
Q  119 aagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||||||||||||||||||||    
T  19519053 aagtcacttgatgatgttgatattattcga 19519024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 8e-54; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 31944561 - 31944709
Alignment:
Q  3 ccctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gta 99  Q
    ||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||    
T  31944561 ccctgccaataagctagtaaaataatcttataagctcgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatatgtta 31944660  T
Q  100 catcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    || |||| | |||||||||||||||||||||||||||||||||||||||    
T  31944661 caccgagtgtgagatattcaagtcacttgatgatgttgatattattcga 31944709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 4325387 - 4325502
Alignment:
Q  32 ataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gtacatcgagcgggagatattcaagtcacttg 128  Q
    ||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    |||| |||| |||||||| ||||  ||||||    
T  4325387 ataagcccgtaagaaagaat-gttaccaacaagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgagtgggagataatcaacccacttg 4325485  T
Q  129 atgatgttgatattatt 145  Q
    |||||||||||||||||    
T  4325486 atgatgttgatattatt 4325502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 12211401 - 12211308
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgat---gtacatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    |||||||||||||||||||||||||||||||||||||||    |||| ||| | |||||||||||||||| |||||||||||||||||||||||    
T  12211401 caacaagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgaacaggagatattcaagtcatttgatgatgttgatattattcga 12211308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 27364883 - 27364976
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    |||||||||||||  ||||||||| |||||||||||||| |   ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27364883 caacaagatcaacagtgtgtggttaaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcga 27364976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 53693209 - 53693116
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||| |||||||| |||||||||||||||||||||||| |   ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  53693209 caacatgatcaacggtgtgtggttcaatgacttgatgatatgttacatcgagcgggagataatcaaggcacttgatgatgttgatattattcga 53693116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 55464835 - 55464742
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||| |||||||||| |||||||||||||| |   ||| ||||||||||| | ||||||||||||||||||||||||||||||||    
T  55464835 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagaaaatcaagtcacttgatgatgttgatattattcga 55464742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 42843707 - 42843800
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||| |||||||||| ||||| |||||||| |   | || ||| | |||||||||||||||||||||||||||||||||| ||||    
T  42843707 caacaagatcaacaatgtgtggtttaatgagttgatgatatgttatattgagtgagagatattcaagtcacttgatgatgttgatattaatcga 42843800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 3074414 - 3074459
Alignment:
Q  100 catcgagcgggagatattcaagtcacttgatgatgttgatattatt 145  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  3074414 catcgagcgggagataatcaagtcacttgatgatgttgatattatt 3074459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 43727944 - 43728087
Alignment:
Q  6 tgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gtacat 102  Q
    ||||||||||||||||||||||||||||||| |  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    || ||    
T  43727944 tgtcaataagctagtaaaataatcttataagcctatgagaaagaattgttaccaacatgatcaacgatgtgtggttcaatgacttgatgatatgttatat 43728043  T
Q  103 cgagcgggagatattcaagtcacttgatgatgttgatattattc 146  Q
    ||| |||||||||||||||||| |||||||||||||||||||||    
T  43728044 cgaacgggagatattcaagtcagttgatgatgttgatattattc 43728087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 9230349 - 9230494
Alignment:
Q  6 tgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gtacat 102  Q
    ||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||| | |||||||||||||||||||||||||||||||    |||||    
T  9230349 tgtcaataagctagtaaaataatcttataagcccgttagaaaaaattgttaccaacatggtcaacgatgtgtggttcaatgacttgatgatatgttacat 9230448  T
Q  103 cgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
     |||||||||||| |||||||| |||||||||||||||||||||||    
T  9230449 agagcgggagatactcaagtcatttgatgatgttgatattattcga 9230494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 23180109 - 23179967
Alignment:
Q  9 caataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gtacatcga 105  Q
    ||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||    |||| |||    
T  23180109 caataagctagtaaaataatcttataagctcgtgagaaataattgttaccaacaagatcaacgatgtgtgtttcaataacttgatgatatgttacaccga 23180010  T
Q  106 gcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||| |||||||||||| |||||||| |||||||||||||||||    
T  23180009 gcgagagatattcaaggcacttgataatgttgatattattcga 23179967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 23804726 - 23804635
Alignment:
Q  5 ctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 96  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  23804726 ctgtcaataagctagtaaaataatcttataagtttgtgagaaagaatggttaccaacaagatcaacgatgtgtggttcaatgacttgttgat 23804635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 27387481 - 27387388
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||| |||||||||| |||||||||||||| |   ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27387481 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcga 27387388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 45197644 - 45197736
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgta--catcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||| ||||||||||||||||||||||||| ||  |||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  45197644 caacaagatcaacaatgtgtggttcaatgacttgatgatatattcatcgagcaggagatattcaagtcacttgacgatgttgatattgttcga 45197736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 19399978 - 19400071
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||| |||||||||| |||||||||||||| |   ||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  19399978 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcgcttgatgatgttgatattattcga 19400071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 26493889 - 26493796
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatg---tacatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||| ||| |||||||||| ||||||||||||||    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26493889 caacaagatgaacaatgtgtggttaaatgacttgatgatacgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcga 26493796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 18375416 - 18375499
Alignment:
Q  68 aacgatgtgtggttcaatgacttgatgatgta---catcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||||||||||||||||||| ||   ||| ||||||||||||||||| ||||| ||| |||||||||||||||||    
T  18375416 aacgatgtgtggttcaatgacttgatgatatattacatggagcgggagatattcaaatcactagataatgttgatattattcga 18375499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 8638598 - 8638707
Alignment:
Q  42 gagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gtacatcgagcgggagatattcaagtcacttgatgatgttga 138  Q
    ||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||    || | ||| |  ||||||||||||||| |||||||| | ||    
T  8638598 gagaaagaattgttaccaacaagatcaacgacgtgtggtttaattacttgatgatatgttataccgaacaagagatattcaagtcatttgatgatatcga 8638697  T
Q  139 tattattcga 148  Q
    ||||||||||    
T  8638698 tattattcga 8638707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 38575464 - 38575371
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    |||||| |||||| ||| |||||| || ||||||||||| |   ||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  38575464 caacaatatcaacaatgggtggttgaacgacttgatgatatgttacaccgagcgggagatattaaagtcacttgatgatgttgatattattcga 38575371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 5288014 - 5288070
Alignment:
Q  4 cctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaa 60  Q
    ||||||||||||||||||||||||||||| |||  |||||||||||| |||||||||    
T  5288014 cctgtcaataagctagtaaaataatcttacaagctcgtgagaaagaagtgttaccaa 5288070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 25024535 - 25024599
Alignment:
Q  10 aataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatg 74  Q
    ||||||||||||||||||||||||||| | | ||||| |||||||||| || || ||||||||||    
T  25024535 aataagctagtaaaataatcttataagccggcgagaaggaattgttactaataaaatcaacgatg 25024599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 24276452 - 24276397
Alignment:
Q  8 tcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaa 63  Q
    |||||||||||||||| |||||||||||   ||| |||||||||||||||||||||    
T  24276452 tcaataagctagtaaattaatcttataacctcgttagaaagaattgttaccaacaa 24276397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 17687 - 17833
Alignment:
Q  5 ctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gtaca 101  Q
    ||||||||||||||||||||||||||||||||  | | ||||| |||||||| |||||||||||||||||||||||||||||||||||||||    ||||    
T  17687 ctgtcaataagctagtaaaataatcttataagctcattagaaataattgttatcaacaagatcaacgatgtgtggttcaatgacttgatgatacgttaca 17786  T
Q  102 tcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||    
T  17787 tcgagcgggagatatttaagtcacttgctgatgttgatattattcga 17833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 14498846 - 14498990
Alignment:
Q  6 tgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gtacat 102  Q
    |||||||||||||||||||||||||||||||  ||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||    |||||    
T  14498846 tgtcaataagctagtaaaataatcttataagctcgtgagaaagatttgttaccaacatgatcaacgatttgtgg-tcaatgacttgatgatatcttacat 14498944  T
Q  103 cgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  14498945 cgagcgggagatattcaagtcatttgatgatgttgatattattcga 14498990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 48606844 - 48606696
Alignment:
Q  1 aaccctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---g 97  Q
    |||||||||||||  ||||||||||||||||||| || |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||        
T  48606844 aaccctgtcaatattctagtaaaataatcttatatgttcgtgggaaagaattgctaccaacaagatcaacgatgtgtggttcaatgacttgatgatatgt 48606745  T
Q  98 tacatcgagcgggagatattcaagtcacttgatgatgttgatattattc 146  Q
    |||| |||||||||||||||||||| ||||||| |||||||||||||||    
T  48606744 tacaccgagcgggagatattcaagtaacttgataatgttgatattattc 48606696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 9637067 - 9637211
Alignment:
Q  3 ccctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gta 99  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||    ||    
T  9637067 ccctgccaataagctagtaaa-taatcttataagttcgtgagaaataattgttaccaacaagatcaatgatgcgtggttcaatgacttgatgatatgtta 9637165  T
Q  100 catcgagcgggagatattcaagtcacttgatgatgttgatattatt 145  Q
    || |||||||| ||||||||||||||||||||||||||||||||||    
T  9637166 caccgagcgggtgatattcaagtcacttgatgatgttgatattatt 9637211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 6 - 148
Target Start/End: Complemental strand, 30559232 - 30559087
Alignment:
Q  6 tgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gtacat 102  Q
    ||||||||||||||||||||| |||||||||  || ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    ||||     
T  30559232 tgtcaataagctagtaaaatattcttataagctcgcgagaaagaattgttatcaacaagatcaacgatgtgtggttctatgacttgatgatatgttacac 30559133  T
Q  103 cgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||    
T  30559132 cgagcgagagatattcaagtcacttgatgatgctgatattattcga 30559087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 52754032 - 52753899
Alignment:
Q  18 agtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gtacatcgagcgggagat 114  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    |||||||| ||||||||    
T  52754032 agtaaaataatcttataagcctgtgagaaagaattattaccaacatgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgaacgggagat 52753933  T
Q  115 attcaagtcacttgatgatgttgatattattcga 148  Q
    |||||||||| |||||||||||||||||||||||    
T  52753932 attcaagtcatttgatgatgttgatattattcga 52753899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 25017371 - 25017479
Alignment:
Q  43 agaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gtacatcgagcgggagatattcaagtcacttgatgatgttgat 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||| |||||| ||||||||||| ||||||||||||||||||    
T  25017371 agaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatatcttacaccgagcgagagatattcaaatcacttgatgatgttgat 25017470  T
Q  140 attattcga 148  Q
    |||||||||    
T  25017471 attattcga 25017479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 32380043 - 32379937
Alignment:
Q  42 gagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatg-tacatcgagcgggagatattcaagtcacttgatgatgttgata 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | | |||||||||||||| |||||||||||||||||||    
T  32380043 gagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgat-atgttacaccaaacgggagatattcaattcacttgatgatgttgata 32379945  T
Q  141 ttattcga 148  Q
    ||||||||    
T  32379944 ttattcga 32379937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 43 - 148
Target Start/End: Complemental strand, 40864909 - 40864801
Alignment:
Q  43 agaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gtacatcgagcgggagatattcaagtcacttgatgatgttgat 139  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    |||| ||| || | ||||||||||||||||||| ||||||||    
T  40864909 agaaataattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatatcttacaccgaacgagggatattcaagtcacttgataatgttgat 40864810  T
Q  140 attattcga 148  Q
    |||||||||    
T  40864809 attattcga 40864801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 17127439 - 17127532
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||| |||||||||| |||||||||||||| |   ||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  17127439 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcgcttgatgatgttgatattattcga 17127532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 26273104 - 26273011
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    |||||| ||||||||||||| ||||||||| |||||||| |   ||||||||| ||||||||||||||||| |||||||||| |||||||||||    
T  26273104 caacaaaatcaacgatgtgttgttcaatgatttgatgatatgttacatcgagcaggagatattcaagtcacgtgatgatgttaatattattcga 26273011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 35949110 - 35949060
Alignment:
Q  98 tacatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  35949110 tacaccgagcgggagatattcaagtcacttgatgatgttgatgttattcga 35949060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 21973963 - 21973870
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||| ||| ||| |||||| ||||| |||||||| |   |||  ||||||||||||||||| |||||||||||  ||||||||||||||    
T  21973963 caacaagattaacaatgagtggttaaatgatttgatgatatgttacactgagcgggagatattcaaatcacttgatgacattgatattattcga 21973870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 30054864 - 30054914
Alignment:
Q  98 tacatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    |||| |||||||||||||||||||||||||||| || |||| |||||||||    
T  30054864 tacaccgagcgggagatattcaagtcacttgatcatattgacattattcga 30054914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 148
Target Start/End: Complemental strand, 12180755 - 12180607
Alignment:
Q  3 ccctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gta 99  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||    ||    
T  12180755 ccctgtcaataagctggtaaaataatcttataagcccgtgagaaaaaattgttaccaacaagatcaacattgtgtggttcaatgacttgatgatatgtta 12180656  T
Q  100 catcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    || |||| |||||| ||||||||||||||||| ||||||||||||||||    
T  12180655 caccgagtgggagaaattcaagtcacttgatgttgttgatattattcga 12180607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 11970913 - 11971047
Alignment:
Q  11 ataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gtacatcgagc 107  Q
    |||| ||||||||||||| ||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    |||| |||||    
T  11970913 ataatctagtaaaataattttataagtatgtgagaaagaattgttaccaataagatcaacgatgtgtggttcaatgacttgatcatatgttacaccgagc 11971012  T
Q  108 gggagatattcaagtcacttgatgatgttgatatt 142  Q
    || ||||||||||||||||||||||||||||||||    
T  11971013 ggaagatattcaagtcacttgatgatgttgatatt 11971047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 24074412 - 24074505
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||| |||||||||  |||||||||||||| |   ||| |||| ||||||||||||||| |||||||||||||||||||||||||    
T  24074412 caacaagatcaacaatgtgtggtaaaatgacttgatgatatgttacaccgagggggagatattcaagttacttgatgatgttgatattattcga 24074505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 25599159 - 25599245
Alignment:
Q  65 atcaacgatgtgtggttcaatgacttgatg--atgt-acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    |||||||| ||| |||||||||||||||||  |||| |||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  25599159 atcaacgacgtgcggttcaatgacttgatggtatgttacatcgagtgggagataatcaagtcacttgatgatgttgatattattcga 25599245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 3050894 - 3050954
Alignment:
Q  87 acttgatgatgt-acatcgagcgggagatattcaagtcacttgatgatgttgatattattc 146  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3050894 acttgatgatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattc 3050954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 25340428 - 25340538
Alignment:
Q  41 tgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttg 137  Q
    ||||||| || || ||||||||||||||| |||||||| || | ||| |||||||| |   ||| | || || ||||||| |||||||||||||||||||    
T  25340428 tgagaaataagtgctaccaacaagatcaatgatgtgtgattaagtgatttgatgatatgttacacccagtggaagatatttaagtcacttgatgatgttg 25340527  T
Q  138 atattattcga 148  Q
    |||||||||||    
T  25340528 atattattcga 25340538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 30621226 - 30621266
Alignment:
Q  108 gggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  30621226 gggagataatcaagtcacttgatgatgttgatattattcga 30621266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 32442146 - 32442056
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgat---gtacatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||| ||| ||||||||||||||||||||||| |||||    |||||||||||| ||||| |  | |||||||||||||||||||||||||||    
T  32442146 caacatgattaacgatgtgtggttcaatgactt-atgatatgttacatcgagcggaagataat--aatcacttgatgatgttgatattattcga 32442056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 1296557 - 1296600
Alignment:
Q  103 cgagcgggagatattcaagtcacttgatgatgttgatattattc 146  Q
    ||||||||||||||||||||||||||||||| || |||||||||    
T  1296557 cgagcgggagatattcaagtcacttgatgatattaatattattc 1296600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 8035480 - 8035438
Alignment:
Q  18 agtaaaataatcttataagtccgtgagaaagaattgttaccaa 60  Q
    ||||||||||||||||| |  ||||||||||||||||||||||    
T  8035480 agtaaaataatcttatatgctcgtgagaaagaattgttaccaa 8035438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 15667918 - 15668066
Alignment:
Q  3 ccctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gta 99  Q
    |||| ||||||||| ||||||||||||||||||  || ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    ||    
T  15667918 ccctatcaataagcaagtaaaataatcttataaacccatgagaaagaattgttaccaacaagatcaaggatgtgtggttcaataacttgatgatatgtta 15668017  T
Q  100 catcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
     | ||||||||||||||||||||||||||||||||||||||||||||||    
T  15668018 taccgagcgggagatattcaagtcacttgatgatgttgatattattcga 15668066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 3857106 - 3856960
Alignment:
Q  3 ccctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatg--atg-ta 99  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||  ||| ||    
T  3857106 ccctgtcaataagctagtaaaataatcttataagcccgtgagaaataattgttaccatcaagatcaacgatgtgtggttaaatgacttgatgacatgtta 3857007  T
Q  100 catcgagcgggagatattcaagtcacttgatgatgttgatattattc 146  Q
    |   ||| ||||||||||||||||| |||||||||||||||||||||    
T  3857006 ctcagagtgggagatattcaagtcatttgatgatgttgatattattc 3856960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 51261922 - 51262072
Alignment:
Q  1 aaccctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---g 97  Q
    |||||||||||||||||||||||||||| | |||||  ||||| |||||||||||||||||||||||||||| ||||||| |||||| ||||||||        
T  51261922 aaccctgtcaataagctagtaaaataatataataagctcgtgaaaaagaattgttaccaacaagatcaacgaagtgtggtacaatgaattgatgatatgt 51262021  T
Q  98 tacatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||   ||||| ||||||||||||||||||||||||||||||||||||||    
T  51262022 tacactaagcggaagatattcaagtcacttgatgatgttgatattattcga 51262072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 43137127 - 43137220
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    |||||||||||||||||| |||||||||||||||||||| |   ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43137127 caacaagatcaacgatgtatggttcaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcga 43137220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 31989029 - 31989122
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||| |||||||||| |||||||||||||| |   ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31989029 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcga 31989122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 53710398 - 53710491
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||| |||  ||||| |||||||||||||| |   ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  53710398 caacaagatcaacaatggatggttgaatgacttgatgatctgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcga 53710491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 24908568 - 24908475
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||| |||||||||| |||||||||||||| |   ||| | ||| ||||||||||||||| ||||| ||||||||||||||||||    
T  24908568 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccaagcaggagatattcaagtcgcttgaagatgttgatattattcga 24908475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 37382044 - 37381951
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgta---catcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    |||||||||||||||||||||||| ||||||| |||||| ||   ||  ||||  ||||||||||||||| ||||||||||| |||||||||||    
T  37382044 caacaagatcaacgatgtgtggttaaatgactcgatgatatattacactgagcatgagatattcaagtcatttgatgatgtttatattattcga 37381951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 43585836 - 43585908
Alignment:
Q  77 tggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattc 146  Q
    ||||| |||||||||||||| |   ||| |||||||||||||| ||||| |||||| |||||| |||||||||    
T  43585836 tggttgaatgacttgatgatatgttacaccgagcgggagatatccaagttacttgacgatgttaatattattc 43585908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 12539525 - 12539666
Alignment:
Q  9 caataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatg--atgtacatcgag 106  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||  ||||  | ||||    
T  12539525 caataagctagtaaaagaatcttataagcccgtgagaaagaattgttaccaacaagatcaacaatgcgtggttcaatgacttgatgatatgttaaccgag 12539624  T
Q  107 cgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    |   ||||||||||||||||||||||||||||||||||||||    
T  12539625 cataagatattcaagtcacttgatgatgttgatattattcga 12539666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 34317694 - 34317555
Alignment:
Q  6 tgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gtacat 102  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    ||||     
T  34317694 tgtcaataagctagtaaaagaatcttataaatccatgagaaagaattgttaccaacaagatcaatgatgtgtggttcaatgacttgatgatatgttacac 34317595  T
Q  103 cgagcgggagatattcaagtcacttgatgatgttgatatt 142  Q
    ||||   |||||||||||||||||| ||||||||||||||    
T  34317594 cgagtaagagatattcaagtcacttcatgatgttgatatt 34317555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 62 - 145
Target Start/End: Complemental strand, 35649831 - 35649745
Alignment:
Q  62 aagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattatt 145  Q
    |||||||||||||||| |||||||||||||||||| |   ||| |||||||||||||||||||||| ||||||||||||||||||||    
T  35649831 aagatcaacgatgtgttgttcaatgacttgatgatatgttacaccgagcgggagatattcaagtcatttgatgatgttgatattatt 35649745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 19952006 - 19951913
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||| |||||||| |||||||||||||||| ||| |   |||  ||||| |||||||||||||||||||||||||||||||||||||||    
T  19952006 caacaagattaacgatgtatggttcaatgacttgacgatatgtcacactgagcgagagatattcaagtcacttgatgatgttgatattattcga 19951913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 33453363 - 33453270
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt----acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||||||||||||| ||||||||| || || |    ||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  33453363 caacaagatcaacgatgtgtggt-caatgacttcatcatatgtttacaccgagcgggagatatttaagtcacttgatgatgttgatattattcga 33453270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 13308759 - 13308809
Alignment:
Q  98 tacatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  13308759 tacaccgagcgagagatattcaagtcacttgatgatgttgatattattcga 13308809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 22483549 - 22483642
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||| ||| |||  ||||| |||||||||||||| |   ||| |||||||||||||||||| |||||||||||  ||||||||||||||    
T  22483549 caacaagattaacaatgaatggttaaatgacttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcga 22483642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 34526352 - 34526445
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||| ||| ||| |||||| ||||| |||||||| |   ||| |||||||||||||||||| |||||||||||  ||||||||||||||    
T  34526352 caacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcga 34526445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 22464670 - 22464761
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattc 146  Q
    ||||||||| ||| ||| |||||| ||||| |||||||| |   ||| |||||||||||||||||| |||||||||||  ||||||||||||    
T  22464670 caacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattc 22464761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 435582 - 435435
Alignment:
Q  6 tgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat--------g 97  Q
    |||||||||| ||||||||||||||||||||  ||||||||| |||||||||||||||||||||  |||||||| ||||||||||||||||             
T  435582 tgtcaataagttagtaaaataatcttataagctcgtgagaaaaaattgttaccaacaagatcaataatgtgtggctcaatgacttgatgatatgatatgt 435483  T
Q  98 tacatcgagcgggagatattcaagtcacttgatgatgttgatattatt 145  Q
    |||| ||||||| |||||||||||||||||||| ||||||||||||||    
T  435482 tacaccgagcggaagatattcaagtcacttgattatgttgatattatt 435435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 135029 - 134936
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||| ||| |||||||||| |||||||||||||| |   ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  135029 caacaagatgaacaatgtgtggttaaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcga 134936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 259918 - 260011
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||| ||| ||||||||||||||||||||| |   ||||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  259918 caacaagatcaacaatgagtggttcaatgacttgatgatatgttacatcgagcgggatatattcaagtcacttgatgacattgatattattcga 260011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 214336 - 214243
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||||||| || ||||||| |||||||||||||| |   ||| ||||| |||||||||| |||||||||||||||||||||||||||||    
T  214336 caacaagatcaacaatatgtggttgaatgacttgatgatatgttacaccgagcaggagatattcgagtcacttgatgatgttgatattattcga 214243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 1439 - 1489
Alignment:
Q  98 tacatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  1439 tacaccgagcgggagatattcaaatcacttgatgatgttgatattattcga 1489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 15814 - 15907
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcga 148  Q
    ||||||||| ||| ||| |||||| ||||| |||||||| |   ||| |||||||||||||||||| |||||||||||  ||||||||||||||    
T  15814 caacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcga 15907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 197105 - 197196
Alignment:
Q  58 caacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattc 146  Q
    ||||||||| ||| ||| |||||| ||||| |||||||| |   ||| |||||||||||||||||| |||||||||||  ||||||||||||    
T  197105 caacaagattaacaatgagtggttaaatgaattgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattc 197196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University