View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1306_low_52 (Length: 211)
Name: NF1306_low_52
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1306_low_52 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 11645072 - 11644886
Alignment:
| Q |
23 |
atgttgatttccagcaactggaacctcataggtctaaactcaaatttaaatgtagtgatttttggaatagcgatgtgtttggataaaataatacagtctc |
122 |
Q |
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| T |
11645072 |
atgttaatttccagcaactggaacctcctaggtctaaactcaaatttaaatgtagtgatttttgaaatagcaatgtgtttggataaaataata--gtcta |
11644975 |
T |
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| Q |
123 |
tttgatggtcctctctttgttaccgaaatgctgccaaatcgatatggcggagttgcaatctcgcacacaattaaggaaagtctcatcat |
211 |
Q |
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| T |
11644974 |
tttgatggtcctctctttgttaccgaaatgctgccaaatcgatatggaggagttgcaatctcgcacacaatgaaggaaagtctcatcat |
11644886 |
T |
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