View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1306_low_8 (Length: 502)
Name: NF1306_low_8
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1306_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 7 - 490
Target Start/End: Complemental strand, 39672686 - 39672203
Alignment:
| Q |
7 |
tccaacaaaatcaagtaaactaaaaagaagcaaaatggataattagtaaattagacttaccaatcaagagcagtaatgacaacaccagcccaaagaggaa |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39672686 |
tccaacaaaatcaagtaaactaaaaagaagcaaaatggataattagtaaattagacttaccaatcaagagcagtaatgacaacaccagcccaaagaggaa |
39672587 |
T |
|
| Q |
107 |
taactccattactaagaatcctaatagcaatagcactaccaataacctcttgtatgtcagaaccaataagagcaaactcagccataacccaaagcacata |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39672586 |
taactccattactaagaatcctaatagcaatagcactaccaataacctcttgtatgtcagaaccaataagagcaaactcagccataacccaaagcacata |
39672487 |
T |
|
| Q |
207 |
cctagcccatctaggatactcctccctacaaagctcagccaaatgcttccctgtagccacaccaagccttgctgacaaaagctgaatcaaaagccccata |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
39672486 |
cctagcccatctaggatactcctccctacaaagctcagccaaatgcttccctgtagccacaccaagcctagctgacaaaagctgaatcaaaagtcccata |
39672387 |
T |
|
| Q |
307 |
gctgtggcccacataagaagccgtaacaaagaatacccagcaatggcacctgcttgtaggtctccttctaagttccctgggtccaaaaacgctatactca |
406 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39672386 |
gctgtggcccacataagaagccataacaaagaatacccagcaatggcaccagcttgtaggtctccttctaagttccctggatccaaaaacgctatactca |
39672287 |
T |
|
| Q |
407 |
tgagaaaaccaggtccagtagatagcgatagcttcttccatgaaaatggtggcaccgaggtacgccaggttgtggagtcgtcta |
490 |
Q |
| |
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| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| |
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| T |
39672286 |
ttagaaaaccaggtccagtgaatagccatagcttcttccatgaaaatggtggcaccgaggtaccccagtttgtggattcgtcta |
39672203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 452
Target Start/End: Original strand, 9562357 - 9562520
Alignment:
| Q |
289 |
tgaatcaaaagccccatagctgtggcccacataagaagccgtaacaaagaatacccagcaatggcacctgcttgtaggtctccttctaagttccctgggt |
388 |
Q |
| |
|
|||||||||||||||||| | | |||||||||||||| | |||||| |||||||||| ||| | ||| | || || ||| |||| ||||| || | | |
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|
| T |
9562357 |
tgaatcaaaagccccatatcaatagcccacataagaagtcataacaatgaatacccagaaattgtaccagattaaagatcttcttccaagtttccaagat |
9562456 |
T |
|
| Q |
389 |
ccaaaaacgctatactcatgagaaaaccaggtccagtagatagcgatagcttcttccatgaaaa |
452 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||| | ||| | ||| |||||||||||||| |
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|
| T |
9562457 |
ccaaaaatgctatactcattagaaaacccggtccactgaataagggtagtttcttccatgaaaa |
9562520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 8e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 63 - 458
Target Start/End: Original strand, 5805221 - 5805616
Alignment:
| Q |
63 |
ttaccaatcaagagcagtaatgacaacaccagcccaaagaggaataactccattactaagaatcctaatagcaatagcactaccaataacctcttgtatg |
162 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||| || |||||||| | ||||||||||||||| |||||||||||||||||||| || |
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|
| T |
5805221 |
ttaccaatctaaagcagtaatgacaacaccagcccaaagaggaacaaggccattactcaaaatcctaatagcaatggcactaccaataacctcttgaata |
5805320 |
T |
|
| Q |
163 |
tcagaaccaataagagcaaactcagccataacccaaagcacatacctagcccatctaggatactcctccctacaaagctcagccaaatg-cttccctgta |
261 |
Q |
| |
|
||||||||||| | ||||| |||| ||| | |||||| ||| ||||||||| |||||||||| || |||||||| ||||||||||| |||||| ||| |
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|
| T |
5805321 |
tcagaaccaattaaagcaacttcagtcatcaaccaaagaacaatcctagcccaagtaggatactcatctctacaaagttcagccaaatgtcttccc-gta |
5805419 |
T |
|
| Q |
262 |
gccacaccaagccttgctgacaaaagctgaatcaaaagccccatagctgtggcccacataagaagccgtaacaaagaatacccagcaatggcacctgctt |
361 |
Q |
| |
|
|| ||||| | |||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||| |||||||||||||| ||||| | || |
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|
| T |
5805420 |
gcaacacctaaccttgctgacaaaagctgaatcaaaagccccatagcagtagcccacataagaagccataacaatgaatacccagcaattgcaccagatt |
5805519 |
T |
|
| Q |
362 |
gtaggtctccttctaagttccctgggtccaaaaacgctatactcatgagaaaaccaggtccagtagatagcgatagcttcttccatgaaaatggtgg |
458 |
Q |
| |
|
| || |||||||| ||||| || || |||||||| ||||||||||| |||||||| |||||| | ||| | | || |||||||||||||| ||||| |
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|
| T |
5805520 |
gaagatctccttccaagtttccaggatccaaaaatgctatactcattagaaaacctggtccactgaataaccagagtttcttccatgaaaacggtgg |
5805616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 64 - 245
Target Start/End: Complemental strand, 47290471 - 47290290
Alignment:
| Q |
64 |
taccaatcaagagcagtaatgacaacaccagcccaaagaggaataactccattactaagaatcctaatagcaatagcactaccaataacctcttgtatgt |
163 |
Q |
| |
|
||||||||| ||||||||| | |||||||||||||||||| | ||| ||| |||||||||| |||||||||||||||||||||||||||||| || | |
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|
| T |
47290471 |
taccaatcagaagcagtaataagaacaccagcccaaagaggcaaaacaccacgactaagaatctgaatagcaatagcactaccaataacctcttgaatat |
47290372 |
T |
|
| Q |
164 |
cagaaccaataagagcaaactcagccataacccaaagcacatacctagcccatctaggatactcctccctacaaagctcagc |
245 |
Q |
| |
|
||| |||||| | ||||| |||||||||| |||||||||||| || ||||| | ||||||||||| ||||||||||||| |
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|
| T |
47290371 |
cagcaccaatcaaagcaagttcagccataaaccaaagcacatatctcgcccaattcggatactcctctttacaaagctcagc |
47290290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 458
Target Start/End: Complemental strand, 47290198 - 47290077
Alignment:
| Q |
337 |
gaatacccagcaatggcacctgcttgtaggtctccttctaagttccctgggtccaaaaacgctatactcatgagaaaaccaggtccagtagatagcgata |
436 |
Q |
| |
|
|||||||| ||||| || ||||||||||| || ||||| || ||||| || |||||||| ||||||||||| | || || ||||| || | | | ||| |
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|
| T |
47290198 |
gaataccctgcaatcgctcctgcttgtagatcaccttccaaattcccaggatccaaaaatgctatactcatcaagaatcctggtcctgtgaacatccata |
47290099 |
T |
|
| Q |
437 |
gcttcttccatgaaaatggtgg |
458 |
Q |
| |
|
|||||||||||||||| ||||| |
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|
| T |
47290098 |
gcttcttccatgaaaaaggtgg |
47290077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 62 - 458
Target Start/End: Complemental strand, 10388442 - 10388046
Alignment:
| Q |
62 |
cttaccaatcaagagcagtaatgacaacaccagcccaaagaggaataactccattactaagaatcctaatagcaatagcactaccaataacctcttgtat |
161 |
Q |
| |
|
|||||||||||| || || || | |||||||||||||| |||| || ||||| ||||||||| ||| ||||||||||||||||||||||||||| || |
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|
| T |
10388442 |
cttaccaatcaaaggctgtgataataacaccagcccaaatgggaagaagtccatggctaagaatcttaagagcaatagcactaccaataacctcttgaat |
10388343 |
T |
|
| Q |
162 |
gtcagaaccaataagagcaaactcagccataacccaaagcacatacctagcccatctaggatactcctccctacaaagctcagccaaatgcttccctgta |
261 |
Q |
| |
|
|||| | |||| | ||| |||||||| | | ||| | | ||||||||| | | ||| ||||||||||||||||| ||||| || ||| || |
|
|
| T |
10388342 |
atcagcagcaatcaaagccaactcagctaagaaccacaaaagtagcctagcccaattggaatattcctccctacaaagctccgccaagtggcgccccgtg |
10388243 |
T |
|
| Q |
262 |
gccacaccaagccttgctgacaaaagctgaatcaaaagccccatagctgtggcccacataagaagccgtaacaaagaatacccagcaatggcacctgctt |
361 |
Q |
| |
|
|| ||||||||||| || || ||||| || || | |||||||| |||| |||||| | ||||| | ||| || ||||| ||||| ||||| |||| |
|
|
| T |
10388242 |
gcaacaccaagcctcgccgataaaagttgtatgaggagccccattatggtggaccacattaaaagccaaagcaacgagtaccctgcaatcgcaccggctt |
10388143 |
T |
|
| Q |
362 |
gtaggtctccttctaagttccctgggtccaaaaacgctatactcatgagaaaaccaggtccagtagatagcgatagcttcttccatgaaaatggtgg |
458 |
Q |
| |
|
| | ||||||||||| ||| ||||| |||||||| || | |||||| |||| || || || || | ||| | ||||||||||||||||||||||| |
|
|
| T |
10388142 |
gcaagtctccttctatgtttcctggatccaaaaatgccacactcattagaagccctggccccgtgaagagccagagcttcttccatgaaaatggtgg |
10388046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 286 - 416
Target Start/End: Original strand, 21016784 - 21016914
Alignment:
| Q |
286 |
agctgaatcaaaagccccatagctgtggcccacataagaagccgtaacaaagaatacccagcaatggcacctgcttgtaggtctccttctaagttccctg |
385 |
Q |
| |
|
||||||||||||||||| ||| || |||||||||||||| | |||||| ||||||| || ||| |||| | ||| || |||||||| ||||| || | |
|
|
| T |
21016784 |
agctgaatcaaaagccctgtagtagtagcccacataagaagtcataacaacgaataccaagaaattacaccagattgaagatctccttccaagtttccag |
21016883 |
T |
|
| Q |
386 |
ggtccaaaaacgctatactcatgagaaaacc |
416 |
Q |
| |
|
| |||||||| | ||||||||| |||||||| |
|
|
| T |
21016884 |
gatccaaaaatgttatactcattagaaaacc |
21016914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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