View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1307-Insertion-2 (Length: 402)
Name: NF1307-Insertion-2
Description: NF1307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1307-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 287
Target Start/End: Original strand, 254548 - 254822
Alignment:
| Q |
7 |
agaaagaacaagaagatgtgagaagaaattgagaaaccattgtgatgacatttctgttatatatacttgcaacataattgtgtaaactttgatggaaaca |
106 |
Q |
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| T |
254548 |
agaaggaacaagaagatgtgagaagaaactgagaaaccattgtgatgacatttctgtcatatatacttgcaacataattgtgtaaactttgatggaaaca |
254647 |
T |
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| Q |
107 |
ttcccccaaaagggttacaagccttgacatgcatatgtatgaaatgggtgttaattaattgagttaccacagaattgaattgaatgtcagtggtggatga |
206 |
Q |
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| T |
254648 |
ttcccccaaaagggttacaagccttgacatgcatatatatgaaatgggtg----ttaattgagttaccatagaattgaattgaatgtcagtggtggatga |
254743 |
T |
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| Q |
207 |
tatcaatgaggataatttaaatgcaactg---agtttggcactatcttgaataaatataaagcctgtttacatttgaatcaaaa |
287 |
Q |
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| T |
254744 |
tatcaacgagga-----taaatgcaattgagtagtttggcactatcttgaagaaatacaaagcttgtttacatttgaatcaaaa |
254822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 255225 - 255279
Alignment:
| Q |
346 |
aaaaagtgatatgtgtatgatttctccttattatattgaattttacaaatctaca |
400 |
Q |
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| T |
255225 |
aaaaagtaatatgtgtatgatttttccttattatattgaattttacaaatctaca |
255279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 347
Target Start/End: Original strand, 255116 - 255168
Alignment:
| Q |
295 |
gttaattttattagaaggcaagccaaccatgttgctcgtacccttgacttcaa |
347 |
Q |
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| T |
255116 |
gttaattttataagaaggcaagccaaccatgttcctcatacccttgacttcaa |
255168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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