View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1307-Insertion-4 (Length: 278)
Name: NF1307-Insertion-4
Description: NF1307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1307-Insertion-4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 24 - 278
Target Start/End: Original strand, 6916699 - 6916951
Alignment:
| Q |
24 |
gggtcaacaaaattttgaaagcaaataaaaagtagctataattgtgatagtgtacaatttggtgtcactccaatgtttttattgggaaacttgatttaat |
123 |
Q |
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| T |
6916699 |
gggtcaacaaaattttgaaagcaaataaaaagtagctataattgtgatagtgtacaatttggtgtcactccaatgtttttattgggaaacttgatttaac |
6916798 |
T |
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| Q |
124 |
attaaatttatcatatatttgcgttttcttatattttagttgacacatacatgctcattttcaattctatcatacattgttcagctagtttagatttttg |
223 |
Q |
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| T |
6916799 |
attaaatttatcatatatttgcgttttcttatattttagttgacacatacatgctcattttcaattctatcatacattgttcagctagtttagatttttg |
6916898 |
T |
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| Q |
224 |
ttcacttatcaatgcacttccgactgtaaatctgtgatgaggtgataatcatggc |
278 |
Q |
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| T |
6916899 |
ttcacttatcaatgcacttctgactgtaaa--tgtgatgaggtgataatcatggc |
6916951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 6890644 - 6890693
Alignment:
| Q |
203 |
ttcagctagtttagatttttgttcacttatcaatgcacttccgactgtaa |
252 |
Q |
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| T |
6890644 |
ttcagctagtttagattttggttcacttgtcaatgtacttctgactgtaa |
6890693 |
T |
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