View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13070_high_10 (Length: 415)
Name: NF13070_high_10
Description: NF13070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13070_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 4547367 - 4547757
Alignment:
| Q |
1 |
tctaaacaaccaaaccatccaccactaaccctaaatccaaaaataaagctacatggatcagacgcggctttcaatcatatatctatcaaactcattaata |
100 |
Q |
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| T |
4547367 |
tctaaacaaccaaaccatccaccactaaccctaaatccaaaaataaagctacatggatcagacgccgctttcaatcatatatctatcaaactcattaata |
4547466 |
T |
|
| Q |
101 |
atattgtaatattgtgctaataatcaaagataaggnnnnnnn--ctgaccagatgattgacgatgtgcgatccagaagtatttcctcttgaattacaaaa |
198 |
Q |
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| T |
4547467 |
atattgt--------gctaataatcaaagataacgagaaaaaaactgaccagatgattgacaatgtgcgatccagaagtatttcctcttgaattacaaaa |
4547558 |
T |
|
| Q |
199 |
ccattttctacacgaaggcacattacacctaacaacacaggcaggatttgaaactccacaataacgacaagcatgttcagtaaaatcccctttcccaaat |
298 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4547559 |
ccattttcgacacgaaggcacattacacctaacaacacaggcaggatttgaaactccacaataacgacaagcatgttcagtaaaatccccttttccaaat |
4547658 |
T |
|
| Q |
299 |
tcataattatcgtcatcaccagtatcttcaaaattcaacccactaatcccagaagcaagcgaatccaccatctgtgacccgcttccacttcctccaccg |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4547659 |
tcataattatcgtcatcaccagtatcttcaaaattcaacccactcatcccagaagcaagcgaatccaccatctgtgacccgcttccacttcctccaccg |
4547757 |
T |
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