View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13070_high_16 (Length: 281)
Name: NF13070_high_16
Description: NF13070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13070_high_16 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0099 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 18618231 - 18617970
Alignment:
| Q |
1 |
agcaaatattttacagtgatccataagtcttcatgaaacctaatattaacaaacatagttaccatctaactagagtcatactgcatcagtcatactacat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18618231 |
agcaaatattttacagtgatccataagtctttatgaaacctaatatgagcaaacatagttaccatctaactagagtcatattgcatcagtcatactacat |
18618132 |
T |
|
| Q |
101 |
ctgtcatgctacatcagtcatactatatcaccaagactggctaccattaataaataaaaatagagttttaagagacattaagtacacaacaaacaaatta |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18618131 |
cagtcatgctacatcagtcatactatatcaccaagactggctaccattaataaataaaaatagagttttaagagacattaagtacacaacaaacaaatta |
18618032 |
T |
|
| Q |
201 |
acactcttaaactctttcccacatggaagaagtcaaatctaaacatggccattagggttttc |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18618031 |
acactcttaaactctttcccacatggaagaagtcaaatctaaacatggtcattagggttttc |
18617970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 20357479 - 20357285
Alignment:
| Q |
5 |
aatattttacagtgatccataagtcttcatgaaacctaatattaac-aaacatagttaccatctaactagagtcatactgcatcagtcatactacatctg |
103 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||| || |||||||||| ||| ||| | ||||||| ||||||||||| || |||||||||||||| | |
|
|
| T |
20357479 |
aatattttacaatgatcaataattcttcatgagacttaatattaacgaaatataaatgccatctagctagagtcataatgtatcagtcatactac----g |
20357384 |
T |
|
| Q |
104 |
tcatgctacatcagtcatactatatcaccaagactggctaccattaataaataaaaatagagttttaagagacattaagtacacaacaaacaaattaaca |
203 |
Q |
| |
|
|||| |||| ||| ||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||| | ||| || |
|
|
| T |
20357383 |
tcattctac-----------tatgtcaccaagactagctaccatccataat-----atagagttttaagagacattaagtacacaacaaattagttagca |
20357300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 256
Target Start/End: Complemental strand, 13464130 - 13463896
Alignment:
| Q |
5 |
aatattttacagtgatccataagtcttcatgaaacctaatattaaca-aacatagttaccatctaactagagtcatactgcatcagtcatactacatctg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
13464130 |
aatattttacagtgatccataagtcttcatgagacctaatattaacataacatagttaccatctagttagagtcataatgcatcagtcata--------- |
13464040 |
T |
|
| Q |
104 |
tcatgctacatcagtcatactatatcaccaagactggctaccattaataaataaaaatagagttttaagagacattaagtacacaacaaacaaattaaca |
203 |
Q |
| |
|
||||||||||| |||||| |||||||| ||| |||||||| | ||||||||||||| ||||||||||||||||||||||||| ||||| | |
|
|
| T |
13464039 |
-----ctacatcagtcctactatgtcaccaaggctgactaccatt----caaaaaaatagagtttgaagagacattaagtacacaacaaactaattagaa |
13463949 |
T |
|
| Q |
204 |
ctcttaaactctttcccacatggaagaagtcaaatctaaacatggccattagg |
256 |
Q |
| |
|
|||||||||| |||||| || |||||||| |||||||||||| ||||||| |
|
|
| T |
13463948 |
ctcttaaactatttcccgcacactagaagtcatatctaaacatggacattagg |
13463896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 257
Target Start/End: Original strand, 19239499 - 19239733
Alignment:
| Q |
5 |
aatattttacagtgatccataagtcttcatgaaacctaatattaacaaa-catagttaccatctaactagagtcatactgcatcagtcatactacatctg |
103 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
19239499 |
aatattttacgatgatccataaatcttcatgagacctaatattaacaaaacatagttacaatctaactagagtcataatgcatcagtcata--------- |
19239589 |
T |
|
| Q |
104 |
tcatgctacatcagtcatactatatcaccaagactggctaccattaataaataaaaatagagttttaagagacattaagtacacaacaaacaaattaaca |
203 |
Q |
| |
|
| ||||||||| |||||| |||||||| ||||||||||| | || ||| ||||| ||||||||||||||||||||||||| ||||| || |
|
|
| T |
19239590 |
-----cgacatcagtcctactatgtcaccaaggctggctaccatcca-----aataatgaagtttgaagagacattaagtacacaacaaactaattagca |
19239679 |
T |
|
| Q |
204 |
ctcttaaactctttcccacatggaagaagtcaaatctaaacatggccattaggg |
257 |
Q |
| |
|
|||||||||| ||||| || |||||||| ||||||||||||||||||||| |
|
|
| T |
19239680 |
ctcttaaactttttcctgcacactagaagtcatatctaaacatggccattaggg |
19239733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 21627769 - 21627963
Alignment:
| Q |
5 |
aatattttacagtgatccataagtcttcatgaaacctaatattaacaaac-atagttaccatctaactagagtcatactgcatcagtcatactacatctg |
103 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| || ||||||||||||| ||| | ||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
21627769 |
aatattttacaatgatccataattcttcatgagacttaatattaacaaaatataaatgccatctagctagagtcataatgtatcagtcatactac----- |
21627863 |
T |
|
| Q |
104 |
tcatgctacatcagtcatactatatcaccaagactggctaccattaataaataaaaatagagttttaagagacattaagtacacaacaaacaaattaaca |
203 |
Q |
| |
|
|| | || |||||| ||||||||||| |||||||| | ||| ||||||||||||||||||||||||||||||||||| | ||| || |
|
|
| T |
21627864 |
----gcca------tcctactatgtcaccaagactagctaccatcca-----aaatatagagttttaagagacattaagtacacaacaaactagttagca |
21627948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 21620458 - 21620516
Alignment:
| Q |
160 |
atagagttttaagagacattaagtacacaacaaacaaattaacactcttaaactctttc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
21620458 |
atagagttttaagagacattaagtacacaacaaactagttagcactcttaaactctttc |
21620516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 24984091 - 24984145
Alignment:
| Q |
160 |
atagagttttaagagacattaagtacacaacaaacaaattaacactcttaaactc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
24984091 |
atagagttttaagagacattaagtacacaacaaactagttagcactcttaaactc |
24984145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 24925353 - 24925436
Alignment:
| Q |
5 |
aatattttacagtgatccataagtcttcatgaaacctaatattaacaaac-atagttaccatctaactagagtcatactgcatca |
88 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||| |
|
|
| T |
24925353 |
aatattttacaatgatc-ataagtcttcatgagacataatattaacaaaatataaataccatctaactagagtcataatgcatca |
24925436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 142103 - 142045
Alignment:
| Q |
160 |
atagagttttaagagacattaagtacacaacaaacaaattaacactcttaaactctttc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
142103 |
atagagttttaagagacattaagtacacaacaaactagttagcactcttaaactctttc |
142045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 142234 - 142145
Alignment:
| Q |
10 |
tttacagtgatccataagtcttcatgaaacctaatattaacaaac-atagttaccatctaactagagtcatactgcatcagtcatactac |
98 |
Q |
| |
|
|||||| |||||||||| ||||||||| || ||||||||||||| ||| | |||||| ||||||||||| || |||||||||||||| |
|
|
| T |
142234 |
tttacaatgatccataattcttcatgagacttaatattaacaaaatataaatgtcatctagctagagtcataatgtatcagtcatactac |
142145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 392694 - 392751
Alignment:
| Q |
160 |
atagagttttaagagacattaagtacacaacaaacaaattaacactcttaaactcttt |
217 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
392694 |
atagagttttaagacacattaagtacacaacaaactagttagcactcttaaactcttt |
392751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 18487 - 18568
Alignment:
| Q |
7 |
tattttacagtgatccataagtcttcatgaaacctaatattaacaaac-atagttaccatctaactagagtcatactgcatca |
88 |
Q |
| |
|
||||||||| ||||| |||||||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||| |
|
|
| T |
18487 |
tattttacaatgatc-ataagtcttcatgagacataatattaacaaaatataaataccatctaactagagtcataatgcatca |
18568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University