View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13070_high_2 (Length: 704)

Name: NF13070_high_2
Description: NF13070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13070_high_2
NF13070_high_2
[»] chr2 (1 HSPs)
chr2 (13-686)||(39322520-39323193)


Alignment Details
Target: chr2 (Bit Score: 654; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 13 - 686
Target Start/End: Original strand, 39322520 - 39323193
Alignment:
Q  13 agcataggataggataagtatatataactgaggacaaggacacacctcaaacattgtgtcgtccacctccaggatcatattctcaaacttctggtatata 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39322520 agcataggataggataagtatatataactgaggacaaagacacacctcaaacattgtgtcgtccacctccaggatcatattctcaaacttctggtatata 39322619  T
Q  113 ttaccaagccaaggcatcataacacacttgctggagttttaattagagcagtccagtacctgtatgtcaggtcgaaggttggttctatccgattatctgg 212  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39322620 ttaccaagccaaggcatcataacacacttgctagagttttaattagagcagtccagtacctgtatgtcaggtcgaaggttggttctatccgattatctgg 39322719  T
Q  213 aaacaaatcatggggggaaaactcaaccaatatgcataattaatggttgttacttctaaaggtctaaaagtacattgatcaggcagtgttataacaaaga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39322720 aaacaaatcatggggggaaaactcaaccaatatgcataattaatggttgttacttctaaaggtctaaaagtacattgatcaggcagtgttataacaaaga 39322819  T
Q  313 cataaaataaattgatcatgcctggtagaatatttctacatttatatagaacaatcaactaaactggttggtacctaataatgtcctactaccctcatac 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  39322820 cataaaataaattgatcatgcctggtagaatatttctacatttatatagaacaatcaactaaactggtttgtacctaataatgtcctactaccctcatat 39322919  T
Q  413 aaaaatcaggaaaaacccattatgatgtcttcaaaactagacaacagacttcaagtaatttctttacaaaatcgacaaacttatacttctaactcctaac 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39322920 aaaaatcaggaaaaacccattatgatgtcttcaaaactagacaacagacttcaagtaatttctttacaaaatcgacaaacttatacttctaactcctaac 39323019  T
Q  513 atattttatattaagcctatgtttgctttagtagtgcgtttatcaattccgcagtaaaaaaccacattgcctcgcaagcttggtttcggagcttctgtaa 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39323020 atattttatattaagcctatgtttgctttagtagtgcgtttatcaattccgcagtaaaaaaccacattgcctcgcaagcttggtttcggagcttctgtaa 39323119  T
Q  613 atcgcagtgagagcagccatagacacacatttggccacggaaacacataatcaaacaagtacttagtgtatgtt 686  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39323120 atcgcagtgagagcagccatagacacacatttggccacggaaacacataatcaaacaagtactgagtgtatgtt 39323193  T

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