View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13070_high_20 (Length: 238)
Name: NF13070_high_20
Description: NF13070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13070_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 44885866 - 44886082
Alignment:
| Q |
1 |
tgtcttttggtacactcatcatctctttgtatttgtctatgcacttttgattgtgcatggattcaaactttactttaccaaggaatggtacaagaaaacg |
100 |
Q |
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| T |
44885866 |
tgtcttttggtacactcatcatctctttgtatttgtctatgcacttttgattgtgcatggattcaaactttactttaccaaggaatggtacaagaaaacg |
44885965 |
T |
|
| Q |
101 |
gttagcacctttcttcaattaaactttttccttttaatgtagtttctcagctaattcttttatgttctaaattaggattgtatgtgttttgtagacttgg |
200 |
Q |
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| T |
44885966 |
gttagcacctttcttcaattaaactttttcctttttatgtagtttctcagctaattcttttatgtt-ttaattaggattgtatgtgttttgtagacttgg |
44886064 |
T |
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| Q |
201 |
atgtatttggctattccc |
218 |
Q |
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|||||||||||||||||| |
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| T |
44886065 |
atgtatttggctattccc |
44886082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 44899286 - 44899509
Alignment:
| Q |
4 |
cttttggtacactcatcatctctttgtatttgtctatgcacttttgattgtgcatggattcaaactttactttaccaaggaatggtacaagaaaacggtt |
103 |
Q |
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| T |
44899286 |
cttttggtactctcatcatctctttgtatttgtctatgcccttttgattgtgcatggattcaaactttactttactaaggaatggtacaagaaaacggtt |
44899385 |
T |
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| Q |
104 |
agcacctttcttcaattaaacttttt----ccttttaatgtagtttctcagctaattcttttatgttctaa--attaggattgtatgtgttttgtagact |
197 |
Q |
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| T |
44899386 |
agcaccttccttcaattaaccttttttttcccttttaatctagtttctcagctaattcttgtacattttaaggaactttattgtatctctttggtagact |
44899485 |
T |
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| Q |
198 |
tggatgtatttggctattcccatc |
221 |
Q |
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| T |
44899486 |
tggatgtatttggctattcccatc |
44899509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 44915487 - 44915693
Alignment:
| Q |
4 |
cttttggtacactcatcatctctttgtatttgtctatgcacttttgattgtgcatggattcaaactttactttaccaaggaatggtacaagaaaacggtt |
103 |
Q |
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| T |
44915487 |
cttttggtactctcatcatctctttgtatttgtctatgcccttttggttgtgcatggaatcaaactttacttgactcgggaatggcacaaaaaaacggtt |
44915586 |
T |
|
| Q |
104 |
agcacctttcttcaattaaactttttccttttaatgtagtttctcagctaattcttttatgttctaaattaggattgtatgtgttttgtagacttggatg |
203 |
Q |
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| T |
44915587 |
agcaccttccttgaatta-------tcctttttatccagtttctcagctaattcttgtatattcta----aggattgtatgtgttttgtagacttggatg |
44915675 |
T |
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| Q |
204 |
tatttggctattcccatc |
221 |
Q |
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||||||| |||||||||| |
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| T |
44915676 |
tatttggttattcccatc |
44915693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 39983319 - 39983359
Alignment:
| Q |
181 |
tatgtgttttgtagacttggatgtatttggctattcccatc |
221 |
Q |
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| T |
39983319 |
tatgtgctttgtagacttggatgtatctggctattcccatc |
39983359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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