View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13070_high_23 (Length: 201)

Name: NF13070_high_23
Description: NF13070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13070_high_23
NF13070_high_23
[»] chr5 (3 HSPs)
chr5 (5-201)||(1754209-1754405)
chr5 (47-198)||(1759266-1759422)
chr5 (51-87)||(1756839-1756875)
[»] chr4 (46 HSPs)
chr4 (7-201)||(27513743-27513938)
chr4 (13-199)||(27526081-27526268)
chr4 (5-190)||(27479877-27480063)
chr4 (5-201)||(27557465-27557662)
chr4 (5-199)||(27498391-27498586)
chr4 (5-198)||(27505672-27505866)
chr4 (5-190)||(27476663-27476849)
chr4 (5-198)||(27486959-27487153)
chr4 (13-197)||(27501301-27501486)
chr4 (5-199)||(27444763-27444958)
chr4 (10-199)||(27431117-27431307)
chr4 (5-197)||(27500309-27500502)
chr4 (5-198)||(27523373-27523567)
chr4 (13-164)||(27424519-27424670)
chr4 (5-198)||(27469436-27469630)
chr4 (13-201)||(27473876-27474065)
chr4 (5-199)||(27554285-27554480)
chr4 (5-201)||(27502774-27502971)
chr4 (13-197)||(27516580-27516765)
chr4 (10-164)||(27414309-27414463)
chr4 (5-167)||(27425788-27425950)
chr4 (5-167)||(27570051-27570213)
chr4 (40-198)||(27460489-27460648)
chr4 (116-198)||(27502105-27502188)
chr4 (5-167)||(27420384-27420546)
chr4 (117-197)||(27466909-27466990)
chr4 (13-167)||(27411458-27411612)
chr4 (10-99)||(17970280-17970369)
chr4 (5-167)||(27415600-27415759)
chr4 (13-164)||(27556384-27556535)
chr4 (13-167)||(27567239-27567393)
chr4 (13-167)||(27571607-27571761)
chr4 (5-168)||(27565952-27566115)
chr4 (13-167)||(27419073-27419227)
chr4 (13-167)||(27559242-27559396)
chr4 (13-110)||(27421994-27422091)
chr4 (54-174)||(27514916-27515036)
chr4 (59-167)||(27563348-27563456)
chr4 (127-201)||(27507780-27507855)
chr4 (13-167)||(27446131-27446285)
chr4 (70-164)||(27524565-27524659)
chr4 (34-167)||(27468329-27468462)
chr4 (34-167)||(27478885-27479018)
chr4 (34-167)||(27485945-27486078)
chr4 (54-167)||(27506723-27506836)
chr4 (58-87)||(27585717-27585746)
[»] chr3 (11 HSPs)
chr3 (10-99)||(50904862-50904951)
chr3 (10-167)||(50909941-50910098)
chr3 (13-101)||(38024943-38025031)
chr3 (13-101)||(38031395-38031483)
chr3 (10-101)||(50911937-50912028)
chr3 (10-99)||(55084767-55084856)
chr3 (41-99)||(48838723-48838781)
chr3 (38-167)||(38043912-38044041)
chr3 (10-101)||(38028834-38028925)
chr3 (38-101)||(38033847-38033910)
chr3 (10-101)||(38040149-38040240)
[»] chr2 (1 HSPs)
chr2 (10-99)||(3073550-3073639)
[»] chr8 (1 HSPs)
chr8 (13-85)||(21607380-21607452)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 201
Target Start/End: Complemental strand, 1754405 - 1754209
Alignment:
Q  5 tggacgtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaatt 104  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1754405 tggacgagccaaaaggatatctagctgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaatt 1754306  T
Q  105 gctaaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgtagagaaaccttttcttagatatcacttctcgct 201  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1754305 gctaaacaaatctgaggaacagtttgaatatgatcatccgatgggtggtctcactattccttgtagagaaaccttttcttagatatcacttctcgct 1754209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 198
Target Start/End: Original strand, 1759266 - 1759422
Alignment:
Q  47 aaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaacaaatc----tgaggaacagtttgaatatgatcatc 142  Q
    ||||||||||||||||||| || |||||||| || |||||| | ||||| ||| ||||| | | | || |    ||||||||| ||||||||  | ||||    
T  1759266 aaatgaagcggtttgtgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaagcaagctgaggaacaatttgaatacaaccatc 1759365  T
Q  143 cgatgtgtggtctcactattccttgtagagaa-accttttcttagatatcacttctc 198  Q
    | ||| |||||||||| |||| ||| |||||| |  |||||||||||||||||||||    
T  1759366 caatgggtggtctcaccattctttgcagagaagaagttttcttagatatcacttctc 1759422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 1756875 - 1756839
Alignment:
Q  51 gaagcggtttgtgatccccgtatcatacttgaaccaa 87  Q
    ||||||||||||||||||  |||||||||||||||||    
T  1756875 gaagcggtttgtgatcccaatatcatacttgaaccaa 1756839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 27513938 - 27513743
Alignment:
Q  7 gacgtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgc 106  Q
    ||||||||||||||||||||||| || ||||| |||||  ||||||||||||||||||||||  ||||||||||||||||| | || || ||| |||||     
T  27513938 gacgtgccaaaaggatatctagcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgt 27513839  T
Q  107 taaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgtagagaa-accttttcttagatatcacttctcgct 201  Q
    | ||| || |||| ||||| | ||||||||||||||| ||| ||||||||||||||||||| |||||| |  | ||||||||||||||||||||||    
T  27513838 tgaaccaagctgaagaacaatatgaatatgatcatccaatgggtggtctcactattccttgcagagaagaagtattcttagatatcacttctcgct 27513743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 27526268 - 27526081
Alignment:
Q  13 ccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaaca 112  Q
    ||||| ||||||||||| || |||||||||||  ||||||||||||||||||| || |||||||||||||||||| | ||||| ||| ||||| | | |     
T  27526268 ccaaagggatatctagcagtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagcc 27526169  T
Q  113 aatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgtagagaa-accttttcttagatatcacttctcg 199  Q
    || |||||||||| ||||||||||||||||| | | ||||||||||||||||||| |||||| || |||||||||| |||||||||||    
T  27526168 aagctgaggaacaatttgaatatgatcatccaacgggtggtctcactattccttgcagagaagacgttttcttagagatcacttctcg 27526081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 27479877 - 27480063
Alignment:
Q  5 tggacgtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaatt 104  Q
    |||||||||||||||| |||||||| ||||| || |||||  |||||||||| |||||||| || |||||||||||||||||| | ||||| ||||| ||    
T  27479877 tggacgtgccaaaaggctatctagcagtatacgtaggagagaaaatgaagcgttttgtgattcctgtatcatacttgaaccaaacatcattccaaaagtt 27479976  T
Q  105 gctaaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgtagagaa-accttttcttagatat 190  Q
    | | ||| || |||||||||| ||||||||||||||||| ||| |||||||||| |||||||| |||||| || |||||||||||||    
T  27479977 gttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttagatat 27480063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 27557465 - 27557662
Alignment:
Q  5 tggacgtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaatt 104  Q
    |||| |||||||  |||||||| ||||||||||||||||| ||||||||| |||||||||||||  | |||||||| |||||| | ||||||||| ||||    
T  27557465 tggatgtgccaaggggatatcttgccgtatatgttggagaggaaatgaagaggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaatt 27557564  T
Q  105 gctaaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgtagagaa-accttttcttagatatcacttctcgct 201  Q
    ||| ||  || |||||||||| |||||||||| |||||| ||| |||||||||||||||| || |||||| |  ||||||||||||||||||| ||||    
T  27557565 gctgaatcaagctgaggaacaatttgaatatgttcatccaatgggtggtctcactattccatgcagagaagatgttttcttagatatcacttcgcgct 27557662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 199
Target Start/End: Original strand, 27498391 - 27498586
Alignment:
Q  5 tggacgtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaatt 104  Q
    ||||| ||||||| ||||||||||| |||||||||||||| |||||||| || |||||||||||  ||||||||||||||||| | || || ||| | ||    
T  27498391 tggacatgccaaagggatatctagcagtatatgttggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccatcgttccaagactt 27498490  T
Q  105 gctaaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgtagagaa-accttttcttagatatcacttctcg 199  Q
    | | ||| || | |||||||| || |||||||||||||| ||| |||||||||||||||||||  ||||| || | ||||||||||||||||||||    
T  27498491 gttgaaccaagccgaggaacaattcgaatatgatcatccaatgggtggtctcactattccttgcggagaagacatgttcttagatatcacttctcg 27498586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 27505866 - 27505672
Alignment:
Q  5 tggacgtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaatt 104  Q
    |||| |||||||| || |||||||| || || || |||||  ||||||||||||||||||| || |||||||||||||||||| | ||||| ||| ||||    
T  27505866 tggaggtgccaaaggggtatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaatt 27505767  T
Q  105 gctaaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgtagagaa-accttttcttagatatcacttctc 198  Q
    | | ||| || |||||||||| ||||||||||| ||||| ||| ||||||||||||||||||| |||||| |  ||||||||||||||| |||||    
T  27505766 gttgaaccaagctgaggaacaatttgaatatgaccatccaatgggtggtctcactattccttgcagagaagagattttcttagatatcatttctc 27505672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 27476663 - 27476849
Alignment:
Q  5 tggacgtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaatt 104  Q
    ||||||| ||||| ||||||||||| || |||||||| ||  ||||||||||||||||||| || |||||||||||||||||| | ||||| ||| || |    
T  27476663 tggacgttccaaagggatatctagcagtgtatgttggtgagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaact 27476762  T
Q  105 gctaaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgtagagaa-accttttcttagatat 190  Q
    ||| | | ||  ||||||||| ||||||||||||||||| ||| ||||||| ||||||||||| |||||| || ||||||| |||||    
T  27476763 gctgagccaaagtgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgcagagaagacattttcttggatat 27476849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 27486959 - 27487153
Alignment:
Q  5 tggacgtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaatt 104  Q
    ||||||| ||||| ||||||||||| || || || |||||  ||||||||||||||||||||||  |||||||||| |||||| | || |||||| ||||    
T  27486959 tggacgttccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaaccatcgtttcaagaatt 27487058  T
Q  105 gctaaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgtagagaa-accttttcttagatatcacttctc 198  Q
    | | ||| || |||| ||||| ||||||||||||||||| ||| ||||||| ||||||||||| | |||| || ||||||||||||| |||||||    
T  27487059 gttgaaccaagctgaagaacaatttgaatatgatcatccaatgggtggtcttactattccttgcaaagaagacattttcttagatattacttctc 27487153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 27501301 - 27501486
Alignment:
Q  13 ccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaaca 112  Q
    ||||| |||| |||||| |||||||||||||| |||||||| ||||||||||||||  |||||||||| |||||| | |  |||||| | ||| | |||     
T  27501301 ccaaagggatgtctagcagtatatgttggagaggaaatgaaacggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttgaacc 27501400  T
Q  113 aatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgtagagaa-accttttcttagatatcacttct 197  Q
    || | |||||||| |||||||| |||||||| | | |||||||||||||||||||||||||| || | ||||||||||||||||||    
T  27501401 aagccgaggaacaatttgaatacgatcatccaacgggtggtctcactattccttgtagagaagacatgttcttagatatcacttct 27501486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 27444958 - 27444763
Alignment:
Q  5 tggacgtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaatt 104  Q
    |||| |||||||| |||||||| || ||||| |||||||| ||||||||| |||||||||||||  |||||||||||| |||||| ||||||||| ||||    
T  27444958 tggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaatt 27444859  T
Q  105 gctaaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgtagagaa-accttttcttagatatcacttctcg 199  Q
      | ||  || | |||||||| || | |||||| ||||| ||| |||||||||| |||||||| |||||| || ||||||||||||| ||||||||    
T  27444858 attgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcg 27444763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 27431307 - 27431117
Alignment:
Q  10 gtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaa 109  Q
    |||||||| |||||| | || ||||||||||| || ||||||||| |||||||||||||  ||||||||||||||||| ||||||||||| ||||| | |    
T  27431307 gtgccaaagggatatattgcagtatatgttggggatgaaatgaagaggtttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttga 27431208  T
Q  110 acaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgtagagaa-accttttcttagatatcacttctcg 199  Q
    |  || | |||||||| |||| |||||| ||||| |   |||||||||| |||||||| |||||| || |||||||| |||| ||||||||    
T  27431207 atcaagccgaggaacaatttggatatgaccatccaaccggtggtctcacaattccttgcagagaagacgttttcttaaatattacttctcg 27431117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 5 - 197
Target Start/End: Complemental strand, 27500502 - 27500309
Alignment:
Q  5 tggacgtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaatt 104  Q
    ||||||| ||||||||||||||||| || || || |||||  |||||||||| |||||||||||  |||||||||| ||||||   ||||| ||| ||||    
T  27500502 tggacgtaccaaaaggatatctagcagtgtacgtaggagagaaaatgaagcgatttgtgatccctatatcatacttaaaccaaagttcattccaagaatt 27500403  T
Q  105 gctaaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgtagagaa-accttttcttagatatcacttct 197  Q
    ||| | | ||||||| |||||||| | |||||| ||||| ||| ||||  ||||||||||||| |||||| |||||||||||||  ||||||||    
T  27500402 gctgagccaatctgaagaacagttcggatatgaccatccaatgggtggcatcactattccttgcagagaagaccttttcttagaattcacttct 27500309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 27523567 - 27523373
Alignment:
Q  5 tggacgtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaatt 104  Q
    ||||||| ||||| || |||||||| || || || |||||  ||||||||||||||||||| || |||||||| ||||||||| | ||||| ||| ||||    
T  27523567 tggacgttccaaagggctatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacttcattccaagaatt 27523468  T
Q  105 gctaaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgtagagaa-accttttcttagatatcacttctc 198  Q
    | | | | || | |||||||| ||||||||||| ||||| ||| ||||||| ||||||||||| | |||| || ||||||||||||| |||||||    
T  27523467 gttgagcgaagccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaaagaagacattttcttagatattacttctc 27523373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 27424670 - 27424519
Alignment:
Q  13 ccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaaca 112  Q
    |||||||| ||||| || || |||||||||||  |||||| |||||||||||| || |||||||||||||||||| | ||||||||| ||||||||||      
T  27424670 ccaaaaggctatctcgcagtctatgttggagatcaaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatc 27424571  T
Q  113 aatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattcc 164  Q
    ||||||| ||| | | || |||||||||||| ||| ||||||| || |||||    
T  27424570 aatctgaagaagaatatggatatgatcatccaatgggtggtcttaccattcc 27424519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 27469436 - 27469630
Alignment:
Q  5 tggacgtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaatt 104  Q
    ||||||| ||||| ||||||||||| || || || |||||  ||||||||||||||||||||||  ||||||| ||||| ||| | ||||| ||| || |    
T  27469436 tggacgttccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctatatcatatttgaagcaaacatcattacaagaact 27469535  T
Q  105 gctaaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgtagagaa-accttttcttagatatcacttctc 198  Q
    | | | | || |||| ||||| ||||||||||| ||||| ||| ||||||| ||||||||||| |||||| |  |||||||||||||||| ||||    
T  27469536 gttgagccaagctgaagaacaatttgaatatgaacatccaatgggtggtctaactattccttgcagagaagaaattttcttagatatcacctctc 27469630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 27473876 - 27474065
Alignment:
Q  13 ccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaaca 112  Q
    ||||| ||||||||||| || || || ||||| || |||||| | |||||||||||  ||||||| ||||| |||   ||||| ||| ||||||| | |     
T  27473876 ccaaagggatatctagctgtgtacgtaggagaggagatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagcc 27473975  T
Q  113 aatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgtagagaa-accttttcttagatatcacttctcgct 201  Q
    ||  ||||||||| ||||||||||||||||| ||| |||||||||| ||||||||  ||||| || |||||||||| |||||||||||||    
T  27473976 aaagtgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcggagaagacgttttcttagacatcacttctcgct 27474065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 199
Target Start/End: Original strand, 27554285 - 27554480
Alignment:
Q  5 tggacgtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaatt 104  Q
    |||| |||||||| ||||| || || |||||||||||||| ||||||||||||||||||||  |  | || |  || | |||| | || |||||| ||||    
T  27554285 tggatgtgccaaagggataccttgcagtatatgttggagaggaaatgaagcggtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaatt 27554384  T
Q  105 gctaaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgtagagaa-accttttcttagatatcacttctcg 199  Q
    ||| ||  || |||||||||| |||| |||||||||||| | | || ||||||| ||||||||||||||| || ||||||||||||| ||||||||    
T  27554385 gctgaatcaagctgaggaacaatttggatatgatcatccaacgggtagtctcacaattccttgtagagaagacgttttcttagatattacttctcg 27554480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 5 - 201
Target Start/End: Complemental strand, 27502971 - 27502774
Alignment:
Q  5 tggacgtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaatt 104  Q
    |||| ||||||||||||||||| ||||| ||||| |||||  | ||||||||||||||||| ||  | ||||| ||||| ||| | ||||||||| | ||    
T  27502971 tggatgtgccaaaaggatatcttgccgtttatgtaggagagaagatgaagcggtttgtgattccaatgtcatatttgaatcaaacttcatttcaagactt 27502872  T
Q  105 gctaaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgtagagaa-accttttcttagatatcacttctcgct 201  Q
    ||| | | || ||| |||| | |||| |||||| ||||| ||| ||||||| ||||||||||||  |||| |  ||||| ||||||||||||||||||    
T  27502871 gctgagccaagctgtggaagaatttggatatgaccatccaatgggtggtcttactattccttgtgaagaagattttttcgtagatatcacttctcgct 27502774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 27516765 - 27516580
Alignment:
Q  13 ccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaaca 112  Q
    ||||| ||||||||||| || ||||| ||| | || |||||| | |||||||||||  ||||||| ||||| |||   ||||| ||| ||||| | |||     
T  27516765 ccaaagggatatctagctgtgtatgtaggaaaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgttgaacc 27516666  T
Q  113 aatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgtagagaa-accttttcttagatatcacttct 197  Q
    || |||||||||| ||||||||||| ||||| ||| | ||||||||||||||||| | |||| |  ||||||||||||||||||||    
T  27516665 aagctgaggaacaatttgaatatgaccatccaatggggggtctcactattccttgcaaagaagaagttttcttagatatcacttct 27516580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 27414463 - 27414309
Alignment:
Q  10 gtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaa 109  Q
    ||||||||||| ||||| || || || ||||||||  ||||||  ||||||||||| || |||||||||||||||||| | ||||||||| |||| ||||    
T  27414463 gtgccaaaaggctatcttgcagtctacgttggagataaaatgagacggtttgtgattcctgtatcatacttgaaccaaccctcatttcaagaattactaa 27414364  T
Q  110 acaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattcc 164  Q
    |  |||| || ||| | |||| |||||||||||| ||| ||||||| || |||||    
T  27414363 atcaatcagaagaagaatttggatatgatcatccaatgggtggtcttacaattcc 27414309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 167
Target Start/End: Original strand, 27425788 - 27425950
Alignment:
Q  5 tggacgtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaatt 104  Q
    ||||||||||||| |||||||| || ||||||||||||||  ||   ||||||| |||||||||  ||||||||||||||||| | ||||||||| | ||    
T  27425788 tggacgtgccaaagggatatcttgcagtatatgttggagagaaacaaaagcggtatgtgatcccaatatcatacttgaaccaaccatcatttcaagactt 27425887  T
Q  105 gctaaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttg 167  Q
      | |   ||| ||||||| |||||| |||||||||||| ||| |||| ||||| ||||||||    
T  27425888 attgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttg 27425950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 167
Target Start/End: Complemental strand, 27570213 - 27570051
Alignment:
Q  5 tggacgtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaatt 104  Q
    |||| |||||||| |||||||| || ||||||||||||||  ||  || ||||| ||||||||||||||||||||| | |||| | ||||||||| | ||    
T  27570213 tggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagactt 27570114  T
Q  105 gctaaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttg 167  Q
    ||| |   || |||||||| |||| | |||||||||||| ||| |||| ||||| ||||||||    
T  27570113 gctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggcctcaccattccttg 27570051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 198
Target Start/End: Original strand, 27460489 - 27460648
Alignment:
Q  40 ggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaacaaatctgaggaacagtttgaatatgatc 139  Q
    ||||| || |||||| | |||||||||||  ||||||| ||||| |||   ||||| ||| ||||||| | | ||  ||||||||| |||||||||||||    
T  27460489 ggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaacaatttgaatatgatc 27460588  T
Q  140 atccgatgtgtggtctcactattccttgtagagaa-accttttcttagatatcacttctc 198  Q
    |||| ||| |||||||||| |||||||| |||||| || ||||||| |||||||| ||||    
T  27460589 atccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctc 27460648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 116 - 198
Target Start/End: Complemental strand, 27502188 - 27502105
Alignment:
Q  116 ctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgtagagaa-accttttcttagatatcacttctc 198  Q
    |||||||||| ||||||||||||||||| ||| ||||||| ||||||||||| |||||| || |||||||||||||||| ||||    
T  27502188 ctgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgcagagaagacattttcttagatatcacctctc 27502105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 167
Target Start/End: Original strand, 27420384 - 27420546
Alignment:
Q  5 tggacgtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaatt 104  Q
    ||||||||||||| |||||||| || ||||||||||||||  ||  || ||||| | | ||||||||||||||||||| |||| | |||||||||   ||    
T  27420384 tggacgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatttaatccccgtatcatacttgagccaaccttcatttcaaggctt 27420483  T
Q  105 gctaaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttg 167  Q
    ||| |   ||  ||||||| |||||| |||||||||||| ||| |||| ||||| ||||||||    
T  27420484 gctgagtcaagttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttg 27420546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 27466909 - 27466990
Alignment:
Q  117 tgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgtagagaa-accttttcttagatatcacttct 197  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||||||||||| |||||| |  |||||||||| |||||||||    
T  27466909 tgaggaacaatttgaatatgatcatccaatgggtggtctcactattccttgcagagaagaagttttcttagacatcacttct 27466990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 27411612 - 27411458
Alignment:
Q  13 ccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaaca 112  Q
    |||||||| ||||| || || |||||||||||   |||||  ||||| ||||| || |||||||||||||||||| | || |||||| |||| |||||      
T  27411612 ccaaaaggctatctcgcagtctatgttggagatagaatgagacggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatc 27411513  T
Q  113 aatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttg 167  Q
    || | || ||| | |||| |||||||||||| ||| |||||||||| ||||||||    
T  27411512 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttg 27411458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 17970280 - 17970369
Alignment:
Q  10 gtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaa 99  Q
    |||||||| |||||||| || || || |||||||| |||||||||||||||||||||||    ||||||||||||||| | |||||||||    
T  17970280 gtgccaaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaa 17970369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 167
Target Start/End: Original strand, 27415600 - 27415759
Alignment:
Q  5 tggacgtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaatt 104  Q
    |||| |||||||| |||||||| || || ||||||||| || |||   |||| |||||||||||| ||||||||||||||||| | || |||||| | ||    
T  27415600 tggatgtgccaaagggatatcttgcagtgtatgttggaaaacaaa---agcgatttgtgatccccatatcatacttgaaccaaccatcgtttcaagactt 27415696  T
Q  105 gctaaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttg 167  Q
    | | |   || |||||||| |||||| |||||||||| | ||| |||| ||||| ||||||||    
T  27415697 gttgagtcaagctgaggaagagtttggatatgatcattccatgggtggcctcaccattccttg 27415759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 27556535 - 27556384
Alignment:
Q  13 ccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaaca 112  Q
    |||||||| ||||| || || |||||||||||| |||||||||| |||||||| ||| | ||||  ||||||||| | ||||||||| |||| ||| |      
T  27556535 ccaaaaggctatctcgcagtttatgttggagaaaaaatgaagcgatttgtgattcccatttcattattgaaccaaccttcatttcaagaattactacatc 27556436  T
Q  113 aatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattcc 164  Q
    || | || ||| | |||| |||||||||| | ||| |||||||||| |||||    
T  27556435 aagcagaagaagaatttggatatgatcattctatgggtggtctcacaattcc 27556384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 27567239 - 27567393
Alignment:
Q  13 ccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaaca 112  Q
    |||||||| ||||| || || |||||||||||   |||||  ||||| ||||| || |||||||||||||||||| | || |||||| |||| |||||      
T  27567239 ccaaaaggctatctcgcagtctatgttggagatagaatgagacggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatc 27567338  T
Q  113 aatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttg 167  Q
    || | || ||| | ||||  ||||||||||| ||| |||||||||| ||||||||    
T  27567339 aaacagaagaagaatttggttatgatcatccaatgggtggtctcacaattccttg 27567393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 27571607 - 27571761
Alignment:
Q  13 ccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaaca 112  Q
    |||||||| ||||| || || |||||||||||   ||||| |||||| ||||| || |||||||| |||| |||  | || |||||| |||| |||||      
T  27571607 ccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaattactaaatc 27571706  T
Q  113 aatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttg 167  Q
    |||| || ||| | |||| |||||||||||| ||| |||||||||| ||||||||    
T  27571707 aatcagaagaagaatttggatatgatcatccaatgggtggtctcacaattccttg 27571761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 27566115 - 27565952
Alignment:
Q  5 tggacgtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaatt 104  Q
    ||||||||||||| |||||||| || || |||||||||||  ||   ||||| |||||||||||| |||||||| |||||||| | |  |||||| | ||    
T  27566115 tggacgtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccattgtttcaagactt 27566016  T
Q  105 gct-aaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttgt 168  Q
    ||| | |||| | ||||||| ||  || |||||||||||| ||| |||| ||||| |||||||||    
T  27566015 gctgatacaagt-tgaggaagagcatggatatgatcatccaatgggtggcctcaccattccttgt 27565952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 27419227 - 27419073
Alignment:
Q  13 ccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaaca 112  Q
    |||||||| ||||| || || |||||||||||   ||||| |||||| ||||| || |||||||| |||| |||  | || |||||| |||| |||||      
T  27419227 ccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaattactaaatc 27419128  T
Q  113 aatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttg 167  Q
    |||| || ||| | |||| |||||||||||| ||| ||||||| || ||||||||    
T  27419127 aatcagaagaagaatttggatatgatcatccaatgggtggtcttacaattccttg 27419073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 27559396 - 27559242
Alignment:
Q  13 ccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaaca 112  Q
    |||||||| ||||| || || |||||||||||  |||||||| | ||| |||| ||  | ||||  ||||| ||||| ||||||||| | ||  ||| |     
T  27559396 ccaaaaggctatctcgcagtttatgttggagacaaaatgaagagatttctgattcctatttcattattgaatcaatcttcatttcaatagttattaagcc 27559297  T
Q  113 aatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttg 167  Q
    |||| || ||| |||||| |||||||||||| ||| |||||||||| ||||||||    
T  27559296 aatcagaagaagagtttggatatgatcatccaatgggtggtctcacaattccttg 27559242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 27422091 - 27421994
Alignment:
Q  13 ccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaa 110  Q
    |||||||| ||||| || || |||||||||||   |||||| ||||| ||||| || |||||||||||||||||| | | ||||||| |||| |||||    
T  27422091 ccaaaaggctatctcgcagtctatgttggagatagaatgaaacggttcgtgattccagtatcatacttgaaccaaccattatttcaagaattactaaa 27421994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 27514916 - 27515036
Alignment:
Q  54 gcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggt 153  Q
    |||||||||  |||| |||||||||||||| ||| | ||||||||| | ||| | |   |||| |||||| | |||| |||||||||||| ||| ||||     
T  27514916 gcggtttgtagtccctgtatcatacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggc 27515015  T
Q  154 ctcactattccttgtagagaa 174  Q
    ||||| |||||||||| ||||    
T  27515016 ctcaccattccttgtacagaa 27515036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 27563456 - 27563348
Alignment:
Q  59 ttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcac 158  Q
    ||||||||||||||||||||||||||||| | |  |||||| | ||||| |   || | || ||| |||||| |||||||||||| ||| |||| |||||    
T  27563456 ttgtgatccccgtatcatacttgaaccaaacattgtttcaagatttgctgagtcaagccgaagaagagtttggatatgatcatccaatgggtggcctcac 27563357  T
Q  159 tattccttg 167  Q
     ||||||||    
T  27563356 aattccttg 27563348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 27507855 - 27507780
Alignment:
Q  127 tttgaatatgatcatccgatgtgtggtctcactattccttgtagagaa-accttttcttagatatcacttctcgct 201  Q
    |||| |||||| ||||| ||| ||||||| || |||||||||  |||| | |||||||||||||||||||||||||    
T  27507855 tttggatatgaccatccaatgggtggtcttacaattccttgtgaagaagatcttttcttagatatcacttctcgct 27507780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 27446131 - 27446285
Alignment:
Q  13 ccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaaca 112  Q
    |||||||| ||||| || || |||||||||||| |||||||||| |||||||| ||    ||||  ||||| ||| | ||||||||| | | | ||| |     
T  27446131 ccaaaaggctatcttgcggtttatgttggagaaaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcatttcaagagtcgttaagcc 27446230  T
Q  113 aatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttg 167  Q
    |||| || ||| ||||||||||||||||||  |||  ||||||| | ||||||||    
T  27446231 aatcagaagaagagtttgaatatgatcatcgaatggatggtctctcgattccttg 27446285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 27524565 - 27524659
Alignment:
Q  70 gtatcatacttgaaccaatcgtcatttcaaaaattgctaaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattcc 164  Q
    |||||||| ||||||||| | ||||||||| | ||| | ||  || |||||||| |||||| |||||||||||| ||| |||| ||||| |||||    
T  27524565 gtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattcc 27524659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 27468462 - 27468329
Alignment:
Q  34 tatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaacaaatctgaggaacagtttgaat 133  Q
    |||||||||||  || ||  |||||||||  |||| ||||||||||| |||||| | ||||||||| | ||| | |   |||| |||||| | |||| ||    
T  27468462 tatgttggagagaaactggtgcggtttgtagtccctgtatcatacttaaaccaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggat 27468363  T
Q  134 atgatcatccgatgtgtggtctcactattccttg 167  Q
    |||||||||| ||| |||| ||||| ||||||||    
T  27468362 atgatcatcccatgggtggcctcaccattccttg 27468329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 27479018 - 27478885
Alignment:
Q  34 tatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaacaaatctgaggaacagtttgaat 133  Q
    |||||||||||  ||  ||||||||||||  ||||  ||||||||||||||||| | |  |||||| |||||||| |  || | || ||| | |||| ||    
T  27479018 tatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggat 27478919  T
Q  134 atgatcatccgatgtgtggtctcactattccttg 167  Q
    |||||||||| ||| |||| ||||| ||||||||    
T  27478918 atgatcatcccatgggtggcctcaccattccttg 27478885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 27486078 - 27485945
Alignment:
Q  34 tatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaacaaatctgaggaacagtttgaat 133  Q
    |||||||||||  ||  ||||||||||||  ||||  ||||||||||||||||| | |  |||||| |||||||| |  || | || ||| | |||| ||    
T  27486078 tatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggat 27485979  T
Q  134 atgatcatccgatgtgtggtctcactattccttg 167  Q
    |||||||||| ||| |||| ||||| ||||||||    
T  27485978 atgatcatcccatgggtggcctcaccattccttg 27485945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 167
Target Start/End: Original strand, 27506723 - 27506836
Alignment:
Q  54 gcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaacaaatctgaggaacagtttgaatatgatcatccgatgtgtggt 153  Q
    |||||||||||||||  |||||||||| |||||| | |  |||||| |||||||| |  || | || ||| | |||| |||||||||||| ||| ||||     
T  27506723 gcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtgga 27506822  T
Q  154 ctcactattccttg 167  Q
    ||||| ||||||||    
T  27506823 ctcaccattccttg 27506836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 87
Target Start/End: Original strand, 27585717 - 27585746
Alignment:
Q  58 tttgtgatccccgtatcatacttgaaccaa 87  Q
    ||||||||||||||||||||||||||||||    
T  27585717 tttgtgatccccgtatcatacttgaaccaa 27585746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 50904951 - 50904862
Alignment:
Q  10 gtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaa 99  Q
    |||||||| |||||||| || || || |||||||||||||||||||||||||||||||   | || |||||||||||| | |||||||||    
T  50904951 gtgccaaagggatatcttgcagtgtacgttggagaagaaatgaagcggtttgtgatccatatgtcctacttgaaccaaacttcatttcaa 50904862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 167
Target Start/End: Original strand, 50909941 - 50910098
Alignment:
Q  10 gtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaa 109  Q
    |||||||| || ||||| || || |||||||||||  |||||  ||||||||| |||||| | ||||||||||||||| | ||||||||||| ||| | |    
T  50909941 gtgccaaagggttatcttgcagtgtatgttggagagcaaatgctgcggtttgttatccccatgtcatacttgaaccaagcttcatttcaaaacttgttga 50910040  T
Q  110 acaaatctgaggaacagtttgaatatgatcatccgatgtgtggtctcactattccttg 167  Q
    |  ||   |||||| | |||| |||||||||||| ||| |||| ||||| ||||||||    
T  50910041 atcaagtggaggaagaatttggatatgatcatccaatgggtggcctcacaattccttg 50910098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 38025031 - 38024943
Alignment:
Q  13 ccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaa 101  Q
    ||||| || ||||| || ||||||||||||||  |||||||||||||||| |||||| | ||||||||||||||| | || ||||||||    
T  38025031 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaa 38024943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 38031483 - 38031395
Alignment:
Q  13 ccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaa 101  Q
    ||||| || ||||| || ||||||||||||||  |||||||||||||||| |||||| | ||||||||||||||| | || ||||||||    
T  38031483 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaa 38031395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 50912028 - 50911937
Alignment:
Q  10 gtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaa 101  Q
    |||||||| || ||||| || ||||||||||||||  | ||||| |||||||||||||||   ||||||||||||||| | |||||||||||    
T  50912028 gtgccaaagggctatcttgcggtatatgttggagacaagatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaaaa 50911937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 55084767 - 55084856
Alignment:
Q  10 gtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaa 99  Q
    ||||||||||| | ||| || || |||||||||||  ||||||||||||||||||||||  | || |||||||||||| | |||||||||    
T  55084767 gtgccaaaagggtgtcttgcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaa 55084856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 48838781 - 48838723
Alignment:
Q  41 gagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaa 99  Q
    |||| |||||||||||||||||||| ||||| || ||| |||||||||| |||||||||    
T  48838781 gagaggaaatgaagcggtttgtgattcccgtgtcctacctgaaccaatcttcatttcaa 48838723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 167
Target Start/End: Original strand, 38043912 - 38044041
Alignment:
Q  38 ttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaacaaatctgaggaacagtttgaatatga 137  Q
    ||||||| |||||||||||||||||||||||  | ||||||||||| ||| | || |||||| | ||||| |   || | |||||| | |||| ||||||    
T  38043912 ttggagaggaaatgaagcggtttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatga 38044011  T
Q  138 tcatccgatgtgtggtctcactattccttg 167  Q
    |||||| ||| | || ||||| ||||||||    
T  38044012 tcatccaatgggcggcctcacaattccttg 38044041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 38028925 - 38028834
Alignment:
Q  10 gtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaa 101  Q
    |||||||| || ||||| || || || ||||||||  |||||||||| ||||| ||||||   ||||||||||||||| | |||||||||||    
T  38028925 gtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaa 38028834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 38033910 - 38033847
Alignment:
Q  38 ttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaa 101  Q
    |||||||  |||||||||||||||| ||||||   ||||||||||||||| | |||||||||||    
T  38033910 ttggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaa 38033847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 38040240 - 38040149
Alignment:
Q  10 gtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaa 101  Q
    |||||||| || ||||| || || || ||||||||  |||||||||| ||||| ||||||   ||||||||||||||| | |||||||||||    
T  38040240 gtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaa 38040149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 3073550 - 3073639
Alignment:
Q  10 gtgccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaa 99  Q
    |||||||| |||||||| || || || |||||||| |||||||||||||||||||||||    ||||||||||||||| | |||||||||    
T  3073550 gtgccaaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaa 3073639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 21607452 - 21607380
Alignment:
Q  13 ccaaaaggatatctagccgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaacc 85  Q
    ||||| |||||||| || ||||||||||||||  |||||||||||||||| |||||| | |||||||||||||    
T  21607452 ccaaagggatatcttgcggtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaacc 21607380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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