View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13070_high_4 (Length: 574)
Name: NF13070_high_4
Description: NF13070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13070_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Original strand, 45141974 - 45142533
Alignment:
| Q |
1 |
gatgagtgaagttgaagctaatatgaaagattctgctaatttgaaaggaattacactaaaggctacgcatattgcagaagctgctctctttcttgcatcg |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45141974 |
gatgagtaaagttgaagctaatatgaaagattctgctaatttgaaaggaattacactaaaggctacgcatattgcagaagctgctctctttcttgcatcg |
45142073 |
T |
|
| Q |
101 |
gaagaatcggcttatattagtggacacaattttgtggtcgatggaggcttctctgttattaatagttgtgttcctactactattaaaaaataagcggtcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
45142074 |
gaagaatcggcttatattagtggacacaatttggtggtcgatggaggcttttctgttattaatagttgtgtgcctactactattaaaaaataagtggtcc |
45142173 |
T |
|
| Q |
201 |
aatttggaatgtgataaatatcctacattctgtttctaagtttgttgtaaatttggaatgcgttcctactattagaaaggaaagccttgtaattcttgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45142174 |
aatttggaatgtgataaatatcctacattctgtttctaagtttgttgtaaatttggaatgcgttcctactattagaaaggaaagccttgtaattcttgat |
45142273 |
T |
|
| Q |
301 |
catagtgatgagatcgacctcagtgaggatgtaggattcaaattgatccaaacatcgtgttttcatctttactttctgtaatcttttattt--tgtgtgt |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45142274 |
catagtgatgagatcgacctcagtgaggatgtaggattcaaattgatccaaacatcgtgttttcatctttactttctgtaatcttttattttgtgtgtgt |
45142373 |
T |
|
| Q |
399 |
gtttcgacttcaattcaatttcaagaatttccttggatccaattttaatctattgtttcataacaatagattcaagtcttgatgaagcaatcaaagaagc |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45142374 |
gtttcgacttcaattcaatttcaagaatttccttgcatccaattttaatctattatttcataacaatagattgaagtcttgatgaagcaatcaaagaagc |
45142473 |
T |
|
| Q |
499 |
tatatggctgagaggtatcattcatgaacttgagtacttgacaagttgctgattggtttg |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45142474 |
tatatggctgagaggtatcattcatgaacttgagtacttgacaagttgctgattggtttg |
45142533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 3 - 156
Target Start/End: Original strand, 45152621 - 45152774
Alignment:
| Q |
3 |
tgagtgaagttgaagctaatatgaaagattctgctaatttgaaaggaattacactaaaggctacgcatattgcagaagctgctctctttcttgcatcgga |
102 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||| || || |
|
|
| T |
45152621 |
tgagtgaagttgaagctattgggaatgattctgctaatttgaaaggaattacactaaaggctggtcatattgcagaagctgctatgtttcttgcttccga |
45152720 |
T |
|
| Q |
103 |
agaatcggcttatattagtggacacaattttgtggtcgatggaggcttctctgt |
156 |
Q |
| |
|
||||||||||||||||||||||| || || |||||||||||||||||| |||| |
|
|
| T |
45152721 |
tgaatcggcttatattagtggacaaaacttggtggtcgatggaggcttcactgt |
45152774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 38256466 - 38256599
Alignment:
| Q |
29 |
gattctgctaatttgaaaggaattacactaaaggctacgcatattgcagaagctgctctctttcttgcatcggaagaatcggcttatattagtggacaca |
128 |
Q |
| |
|
|||| |||||||||| | ||||||||| | |||||| | ||||||||||| ||||| | ||||||||||| || ||||| ||||||||||||||||||| |
|
|
| T |
38256466 |
gattatgctaatttgcagggaattacattgaaggctgctcatattgcagagactgctttgtttcttgcatctgatgaatctgcttatattagtggacaca |
38256565 |
T |
|
| Q |
129 |
attttgtggtcgatggaggcttctctgttattaa |
162 |
Q |
| |
|
| || || || |||||||||||||| || ||||| |
|
|
| T |
38256566 |
acttggtcgttgatggaggcttctcagtcattaa |
38256599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 34530995 - 34530943
Alignment:
| Q |
306 |
tgatgagatcgacctcagtgaggatgtaggattcaaa-ttgatccaaacatcg |
357 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||| |||| |
|
|
| T |
34530995 |
tgatgagatcgacctcaacgaggatgtaggattcaaagttgatccaaatatcg |
34530943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 330
Target Start/End: Complemental strand, 29361487 - 29361452
Alignment:
| Q |
295 |
cttgatcatagtgatgagatcgacctcagtgaggat |
330 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29361487 |
cttgatcatagtgatgggatcgacctcagtgaggat |
29361452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 330
Target Start/End: Original strand, 30270623 - 30270658
Alignment:
| Q |
295 |
cttgatcatagtgatgagatcgacctcagtgaggat |
330 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30270623 |
cttgatcatagtgatgggatcgacctcagtgaggat |
30270658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University