View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13070_high_5 (Length: 539)
Name: NF13070_high_5
Description: NF13070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13070_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 43179454 - 43178938
Alignment:
| Q |
1 |
tcatggttaatctagaataatttaaaggagccattgattaaatcctcttacgtaaaagtttcacttagctagctctagtgttt-ctctttgttattgaga |
99 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43179454 |
tcatggttaatctagaacaatttaaaggagccattgattaaatcctcttacgtaaaagtttcacttagctagctctagtgttttctctttgttattgaga |
43179355 |
T |
|
| Q |
100 |
agaggggtgtggtttatcaatttacagaactagttccgtatttataatgatcctttgcaatggaattggaaagggttgtctatgtttaatgtgtaacacg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| |||||||||||||| |
|
|
| T |
43179354 |
agaggggtgtggtttatcaatttacagaactagttccgtatttataatgatcctttgcaatagaa------aaggttgtctatgtctaatgtgtaacacg |
43179261 |
T |
|
| Q |
200 |
tagaatatagacaagtcatatatctatgcatgggaaaattaaagccatatattatctttcnnnnnnngtgttaggaaaacttcaaaatagttattaattt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
43179260 |
tagaatatagacaagtcatatatctatgcatgggaaaattaaagccatatattatctttcaaaaaaagtgttaggaaaacttcaaaatagctattaattt |
43179161 |
T |
|
| Q |
300 |
atgattatgatggataggaaaaaaggggtttctaggtgtgtgtacatgatttgattcgatcaattcaaagataacaaagtgcaagttaaagcatagtcat |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43179160 |
atgattatgatggataggaaaaaaggggtttctaggtgtgtgtacatgatttgattcgatcaattcaaagataacaaagtgcaagttaaagcatagtcat |
43179061 |
T |
|
| Q |
400 |
ttttctacgcgtgtaactactatgttcccttacttagtcaaagtgtctacaatttacaaatgtttggtaaaccatatttctccaatagggtcccattaaa |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43179060 |
ttttctacgcgtgtaactactatgttcccttactttgtcaaagtgtatacaatttacaaatgtttggtaaaccatatttctccaatagggtcccattaaa |
43178961 |
T |
|
| Q |
500 |
taatattgtatatatttttcatg |
522 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
43178960 |
taatattgtatatatttttcatg |
43178938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 43193904 - 43193754
Alignment:
| Q |
1 |
tcatggttaatctagaataatttaaaggagccattgattaaa--tcctcttacgtaaaagtttcacttagctagctctagtgttt-ctctttgttattga |
97 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||||||||||| || | || | |||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
43193904 |
tcatggttaatctagaacaatttaaagatgacattgattaaaaatctttgaactaagaagtttcactaagctagctctagtgttttctctttgttattga |
43193805 |
T |
|
| Q |
98 |
gaagaggggtgtggtttatcaatttacagaactagttccgtatttataatg |
148 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
43193804 |
gaagagtggtgtggtttatcaatttatagaactagttccatatttataatg |
43193754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 43186615 - 43186471
Alignment:
| Q |
6 |
gttaatctagaataatttaaaggagccattgattaaatcctcttacgtaaa--agtttcacttagctagctctagtg-tttctctttgttattgagaaga |
102 |
Q |
| |
|
|||| ||||||| || |||||||||||||||||||||||| | |||| ||||||||| ||||| |||| ||| ||| |||||||| ||||||||| |
|
|
| T |
43186615 |
gttattctagaacaacttaaaggagccattgattaaatccctcaaaataaagaagtttcactaagctaactcttgtgatttttctttgttcttgagaaga |
43186516 |
T |
|
| Q |
103 |
ggggtgtggtttatcaatttacagaactagttccgtatttataat |
147 |
Q |
| |
|
| ||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
43186515 |
gaggtgtggtttatcaatttatcaaactagttccatatttataat |
43186471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 403
Target Start/End: Complemental strand, 43186175 - 43186060
Alignment:
| Q |
292 |
attaatttatgattatgatggataggaaaaaaggggtt-tctaggtgtg--tgtacatgatttgattcgatcaattcaaagataacaaag-tgcaagtta |
387 |
Q |
| |
|
|||||||||||||||||| |||| |||||| |||||| | |||||||| ||| |||| |||||||||||| || ||||||||||||| ||||| ||| |
|
|
| T |
43186175 |
attaatttatgattatgacggattagaaaaatggggttgtttaggtgtgagtgtttatgaattgattcgatcattttaaagataacaaagatgcaaatta |
43186076 |
T |
|
| Q |
388 |
aagcatagtcattttt |
403 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
43186075 |
aagcagcgtcattttt |
43186060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University