View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13070_high_8 (Length: 472)
Name: NF13070_high_8
Description: NF13070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13070_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 38 - 460
Target Start/End: Complemental strand, 33599826 - 33599402
Alignment:
| Q |
38 |
gtgatatccagagatgtggtcattcaaatttaaataatcatagtcaattattttataaacagtaaacacgtcacgacctgtatcatgaagtcaatgggga |
137 |
Q |
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| T |
33599826 |
gtgatatcaagagatgtggtcattcaaatttaaataatcatagtcatttattttataaacagtaaacacgtcacgacctgtatcatgaagtcaatgggga |
33599727 |
T |
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| Q |
138 |
gggcctgtttttgggggatggtttggacagcaggagcacttgttttaagtctctgttaggtgcnnnnnnnggctagtttttatgtctctattaggtgtgt |
237 |
Q |
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| T |
33599726 |
gggcctgtttttgggggatggtttggacagcaggagcacttgttttaagtctctgttaggtgctttttttggctagtttttatgtctctattaggtgtgt |
33599627 |
T |
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| Q |
238 |
tttggcataacacaggtgtggctaatgttggttgagattttcatgagcaacattccaaaacatgatgatctcaatagctttctgagctattattattata |
337 |
Q |
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| T |
33599626 |
tttggcataacacaggtgtggctaatgttggttgagattttcatgagtaacattccaaaacatgatgatctcaatagctttctgagctattattattata |
33599527 |
T |
|
| Q |
338 |
ttgtcttgcatattgttctatctgtaaaatcatttgccaaaactgcgtaggcttgatgatatagctgaaccaatagctactctttctcttagttgtg--a |
435 |
Q |
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| T |
33599526 |
ttgtcttgcatattgttctatctgtaaaatcatttgccaaaactgcgtaggcttgatgatatagctgaaccaatggctactctttctcttagttgtgaaa |
33599427 |
T |
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| Q |
436 |
agtccttttatgtttgatacatatt |
460 |
Q |
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| T |
33599426 |
agcccttttatgtttgatacatatt |
33599402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 423
Target Start/End: Original strand, 44063090 - 44063173
Alignment:
| Q |
336 |
tattgtcttgcatattgttctatctgtaaaatcatttgccaaaactgcgtaggcttgatgatatagctgaaccaatagctactctttc |
423 |
Q |
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| T |
44063090 |
tattgtcttccatattgttctatctgtgaaatcatttgcaaaaac----taaacttgatgatacagctgaaccaatagctgctctttc |
44063173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 44063008 - 44063071
Alignment:
| Q |
273 |
gattttcatgagcaacattccaaaacatgatgatctcaatagctttctgagctattattattat |
336 |
Q |
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| T |
44063008 |
gattttcatgagcaacattccagaacatgatgaacccgatagctttcttagctattgttattat |
44063071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 427
Target Start/End: Complemental strand, 46723425 - 46723348
Alignment:
| Q |
350 |
ttgttctatctgtaaaatcatttgccaaaactgcgtaggcttgatgatatagctgaaccaatagctactctttctctt |
427 |
Q |
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| T |
46723425 |
ttgttctgtctgtactatcatttaccaaaattacataggcttaatgatataactgaaccaataaccgctctttctctt |
46723348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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