View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13070_low_1 (Length: 938)
Name: NF13070_low_1
Description: NF13070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13070_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 472 - 819
Target Start/End: Original strand, 3347845 - 3348204
Alignment:
| Q |
472 |
atggtccgcattttttcttaccaagaaatcatctctaaaatgtaaatgaaattgtaaatatcattaaa------caaatacaactaccatagacaataca |
565 |
Q |
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| T |
3347845 |
atggtccgcattttttcttaccaagaaatcatctctaaaatgtaaatcaagttgtaaatatcattaaaaacttacaaatacaactacgatagacaataaa |
3347944 |
T |
|
| Q |
566 |
atttaaacatccacattattaaattcaaatatttttcgagacctcttcacagtcaacaactttaccttcagtagtatttttgttagttattacatagtat |
665 |
Q |
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| T |
3347945 |
atttaaacatccacattattaaattcaaatatttttcgagacctcttcacagtcaacaactttaccttgagtagtatttttgttagttattacatagtat |
3348044 |
T |
|
| Q |
666 |
tctaaaaatatgaaaatataatttaaaagaaaatatgtatttgtttggcaagaataattttgtcat------tgattaaataaaataaacatagacaact |
759 |
Q |
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| T |
3348045 |
tctaaaaatatgaaaatataatttaaaagaaaatatgtatttgtttggcaagaataattttgtcatttaaagtgattaaataaaataaacatagacaaat |
3348144 |
T |
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| Q |
760 |
gatacgaccaagtttcgttggctcatcttgtcnnnnnnngtttctttgcctcctaacctc |
819 |
Q |
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| T |
3348145 |
gatacgaccaagtttcgttggctcatcttgtcaaaaaaagtttctttgcctcctaacctc |
3348204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 164 - 398
Target Start/End: Original strand, 3346602 - 3346836
Alignment:
| Q |
164 |
atatgcttactcgtatttttaatccttaatttagattggattagcaacatcatactaataaaatattatgatgctttcaacctcattagaaaaaatgtct |
263 |
Q |
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| T |
3346602 |
atatacttactcgtatttttaatccttaatttagattggattagcaacatcatactaataaaatattatgatgctttcaacctcattagaaaaaatgtct |
3346701 |
T |
|
| Q |
264 |
ctctttctttaggcaaaaactaataacgaaatttctatctttattccataagataagcaacacaatttcttttgtccataannnnnnncgagcaaccaat |
363 |
Q |
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| T |
3346702 |
ctctttctttaggcaaaaactaataacgaaatttctatctttattccataagataagcaacacaatttcttttgttcataatttttttcgagcaaccaat |
3346801 |
T |
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| Q |
364 |
tttattagaaatgagagaagtagaaagaatattta |
398 |
Q |
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| T |
3346802 |
tttattagaaatgagagaagtagaaagaatattta |
3346836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 3346458 - 3346519
Alignment:
| Q |
19 |
catctggctctctcataacatgccaagttgcttatagctaactagtgttgcacactactatg |
80 |
Q |
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| T |
3346458 |
catcttgctctctcataacatgccaagttgcttatagctaactagtgttgcacactactatg |
3346519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 396 - 474
Target Start/End: Original strand, 3347732 - 3347810
Alignment:
| Q |
396 |
ttaacccacaactcgnnnnnnntacaagaggtatttgtcccagaaaaattcaaactctaacttaagtacttaaacaatg |
474 |
Q |
| |
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| T |
3347732 |
ttaacccacaactcgaaaaaaatacaggaggtatttgtcccagaaaaattcaaactctaacttaaatatttaaacaatg |
3347810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 409
Target Start/End: Complemental strand, 7441717 - 7441664
Alignment:
| Q |
356 |
caaccaattttattagaaatgagagaagtagaaagaatatttaacccacaactc |
409 |
Q |
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| T |
7441717 |
caaccaattttattagaaaggagagaagtacaaagagtacttaacccgcaactc |
7441664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 888 - 923
Target Start/End: Original strand, 3348263 - 3348298
Alignment:
| Q |
888 |
tttaataccgaatcactacacaaaatcatttcaatt |
923 |
Q |
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| T |
3348263 |
tttaataccgaatcactatacaaaatcatttcaatt |
3348298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 364 - 472
Target Start/End: Complemental strand, 26529186 - 26529078
Alignment:
| Q |
364 |
tttattagaaatgagagaagtagaaagaatatttaacccacaactcgnnnnnnntacaagaggtatttgtcccagaaaaattcaaactctaacttaagta |
463 |
Q |
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| T |
26529186 |
tttattagaaaagagagaagtacaaagaatacttaacccacaattcgggaaaatgacaagagatatttgccccttaaaaaatcaaactctaacttaagta |
26529087 |
T |
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| Q |
464 |
cttaaacaa |
472 |
Q |
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|||||||| |
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| T |
26529086 |
tttaaacaa |
26529078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 409
Target Start/End: Original strand, 19459070 - 19459123
Alignment:
| Q |
356 |
caaccaattttattagaaatgagagaagtagaaagaatatttaacccacaactc |
409 |
Q |
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||||||| ||||||||||| ||||| |||||||||| || |||||||||||||| |
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| T |
19459070 |
caaccaaatttattagaaaggagagcagtagaaagagtacttaacccacaactc |
19459123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 409
Target Start/End: Original strand, 19556748 - 19556801
Alignment:
| Q |
356 |
caaccaattttattagaaatgagagaagtagaaagaatatttaacccacaactc |
409 |
Q |
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||||||| ||||||||||| ||||| |||||||||| || |||||||||||||| |
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| T |
19556748 |
caaccaaatttattagaaaggagagcagtagaaagagtacttaacccacaactc |
19556801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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