View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13070_low_10 (Length: 465)
Name: NF13070_low_10
Description: NF13070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13070_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 43154637 - 43155086
Alignment:
| Q |
1 |
tattagagtgatctcagttttttattgtacaatcatcatgtagaaaagataaatatttaattcctacaagccaaagtgaaaattctaagtgtcctaaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43154637 |
tattagagtgatctcagttttttattgtacaatcatcatgtagaaaagataaatatttaattcctacaagccaaagtgaaaattctaagtgtcctaaaat |
43154736 |
T |
|
| Q |
101 |
ctgagaaacttaaggttaggtaatactaataaactactaaataacaagcacaagtgatttatgattctgatcataatcaaaataaaacttattctcagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43154737 |
ctgagaaacttaaggttaggtaatactaataaactactaaataacaagcacaagtgatttatgattctgatcataatcaaaataaaacttattctcagct |
43154836 |
T |
|
| Q |
201 |
cttgaatcataacagaaagtagctttcannnnnnngataaaatcctcacatttcttatttagtttctctgtctcatctttatcaattatcataggatcat |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43154837 |
cttgaatcataacagaaagtagctttcatttttttgataaaatcctcacatttcttatttagtttctctgtctcatctttatcaattatcataggatcat |
43154936 |
T |
|
| Q |
301 |
tttcctcttcttcaatattcatattttcttgttccactatcaccaaactcttcacttcttcatcttcttctgcttcaataaccacattttctggttctac |
400 |
Q |
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| T |
43154937 |
tttcctcttcttcaatattcatattttcttgttccactatcaccaaactcttcacttcttcatcttcttctgcttcaataaccacattttctggttctac |
43155036 |
T |
|
| Q |
401 |
catgatcaaactcttttcttcttgttgggattcactttccgtaatgttat |
450 |
Q |
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| T |
43155037 |
catgatcaaactcttttcttcttgttgggattcactttccgtaacgttat |
43155086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 211 - 313
Target Start/End: Complemental strand, 43168073 - 43167971
Alignment:
| Q |
211 |
aacagaaagtagctttcannnnnnngataaaatcctcacatttcttatttagtttctctgtctcatctttatcaattatcataggatcattttcctcttc |
310 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||| || ||||| ||||||| |||||||||| || |||||||| ||||||| |
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| T |
43168073 |
aacagaaagtagctttcatctttttgataaaatcctcacatttcttgtttaattcttctgtttcatcttcatcaattatcctaagatcatttccctcttc |
43167974 |
T |
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| Q |
311 |
ttc |
313 |
Q |
| |
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||| |
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| T |
43167973 |
ttc |
43167971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 450
Target Start/End: Complemental strand, 43167841 - 43167747
Alignment:
| Q |
356 |
ttcttcatcttcttctgcttcaataaccacattttctggttctaccatgatcaaactcttttcttcttgttgggattcactttccgtaatgttat |
450 |
Q |
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|||||||||||||||| ||||||||||||| |||||||| || || || |||||||| |||||||||| ||| ||||| ||||| ||| ||||| |
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| T |
43167841 |
ttcttcatcttcttctacttcaataaccactttttctggctccactatcatcaaactattttcttcttcttgatattcattttccataacgttat |
43167747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 371
Target Start/End: Complemental strand, 43167922 - 43167883
Alignment:
| Q |
332 |
ttccactatcaccaaactcttcacttcttcatcttcttct |
371 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |
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| T |
43167922 |
ttccactatcaccaaactcttcacttcttcattttcttct |
43167883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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