View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13070_low_11 (Length: 428)
Name: NF13070_low_11
Description: NF13070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13070_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 414
Target Start/End: Original strand, 19160179 - 19160590
Alignment:
| Q |
11 |
cagagacaaattgtaatatagtttttgaatttgtgttgctaacaaatttatttatttgtgatgtgttgtgtttgatcattgaaattatgcatacttannn |
110 |
Q |
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| T |
19160179 |
cagaaacaaattgtaatatagtttttgaatttgtgttgctaacaaatttatttatttgtgatgtgttgtgtttgatcattgaaattatgcatacttattt |
19160278 |
T |
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| Q |
111 |
nnnncattaaaaaatcatttgtttagtttacctctatttatctatatttagacctttgcaaaataaatatatacagcaatatccacaacacaatttcata |
210 |
Q |
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| T |
19160279 |
ttttcattaaaaaagcatttgattagtttacctgtatttatctatatttagacctttgcaaaataaatatatacagcaaaatccacaacacaatttcata |
19160378 |
T |
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| Q |
211 |
tattattagaaaggaaactttatgc--------agagttacctattagttgtctatgactactatttgctggagattaacatgtctaacgaaaaaacaaa |
302 |
Q |
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| T |
19160379 |
tattattagaaaggaaactttatgcagcagaatagagttacctattagttgtctatgactactatttgctggagattaacatgtctaacgaaaaaacaaa |
19160478 |
T |
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| Q |
303 |
acaaatgttctatcacaaattacttgcattttcaactttctttgcaataataaattttcctttccttttgcttctttctcttgttaattaagagaagaac |
402 |
Q |
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| T |
19160479 |
acaaatgttctatcacaaattacttgcattttgaactttctttgcaataatgaattttcctttccttttgcttctttctcttgttaattaagagaagaac |
19160578 |
T |
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| Q |
403 |
attaataaaagg |
414 |
Q |
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| T |
19160579 |
attaataaaagg |
19160590 |
T |
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