View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13070_low_13 (Length: 399)
Name: NF13070_low_13
Description: NF13070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13070_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 46703200 - 46703588
Alignment:
| Q |
1 |
cctctaactctggaggatcaggttgggaaaagtttgcaaggatagcatgtgcagtaaatttagcatatcctatataatttcataaatataatgaatttag |
100 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46703200 |
cctctaactcttgaggatcaggttgggaaaactttgcaaggatagcatgtgcagtaaatttagcatatcctatataatttcataaatataatgaatttag |
46703299 |
T |
|
| Q |
101 |
acattgttttgttaatttctcttctccaactgcatgctctcctgttatccttttcagatcttaccagcattgtctggccttcgggaactcttattgatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46703300 |
acattgttttgttaatttctcttctccaactgcatgctctcctgttatccttttcagatcttaccagcattgtctggccttcgggaactcttattgatgc |
46703399 |
T |
|
| Q |
201 |
ctgatgaatcagttcaactatatgcatgctctattctctactggcttactcaggattgttcagacgaaatggttcaagctatcgttgagggaaatttttg |
300 |
Q |
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| T |
46703400 |
ctgatgaatcagttcaactatatgcatgctctattctctactggcttactcaggattgttcagacgaaatggttcaagctatcgttgagggaaatttttg |
46703499 |
T |
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| Q |
301 |
cccacgacttgtagagttactactgtaagtccttgactgattagtgattacaatatatttgtgtcttttttctgtagcactgatattct |
389 |
Q |
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| T |
46703500 |
cccacgacttgtagagttactactgtaagtccttgactgattagtgattacaatatatttgtgtcttttttcggtagcactgatattct |
46703588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 389
Target Start/End: Original strand, 46124412 - 46124791
Alignment:
| Q |
3 |
tctaactctggaggatcaggttgggaaaagtttgcaaggatagcatgtgcagtaaatttagcatatcctatataatttcataaatataatgaatttagac |
102 |
Q |
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| T |
46124412 |
tctaactcttcagaatcaggttgggaaaaatttgcaaggatagcatgtgcagtaaatttagcatatcctatataaattaataaatataatgaatttacac |
46124511 |
T |
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| Q |
103 |
attgttttgttaatttctcttctccaactgcatgctctcctgttatccttttcagatcttaccagcattgtctggccttcgggaactcttattgatgcct |
202 |
Q |
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| T |
46124512 |
attgttt-gttatcttctcttctccaactgcatgctctcctgttatctttttcagatgctaccagcattgtctggccttcaggagctcttattgatgcct |
46124610 |
T |
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| Q |
203 |
gatgaatcagttcaactatatgcatgctctattctctactggcttactcaggattgttcagacgaaatggttcaagctatcgttgagggaaatttttgcc |
302 |
Q |
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| T |
46124611 |
gatgaagaagttatactatatgcatgccatctcctctcctggtttactcagaaaggttcagacaaaatggttcaagctatcgttgaggcaaaattttgcc |
46124710 |
T |
|
| Q |
303 |
cacgacttgtagagttactactgtaagtccttgactgattagtgattacaata-tatttgtgtcttttttctgtagcactgatattct |
389 |
Q |
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| T |
46124711 |
cacgacttgtagagttactactgtaagtccttg-------attgattacaataccttttgtgtcttttttcggtagcactgatattct |
46124791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 151 - 389
Target Start/End: Original strand, 46130535 - 46130773
Alignment:
| Q |
151 |
ttttcagatcttaccagcattgtctggccttcgggaactcttattgatgcctgatgaatcagttcaactatatgcatgctctattctctactggcttact |
250 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||| |
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| T |
46130535 |
ttttcagatcttaccagcattgcctggccttcgggaactcttattgatgcctgatgaattagttttactatatgcatgctctattctctactggattact |
46130634 |
T |
|
| Q |
251 |
caggattgttcagacgaaatggttcaagctatcgttgagggaaatttttgcccacgacttgtagagttactactgtaagtccttgactgattagtgatta |
350 |
Q |
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| T |
46130635 |
cgggatggttcaggcaaaatggttcaagctatccttgagggaaatttttgcccgcgacttgtagagttactactgtaagtccttgactgattagtgatta |
46130734 |
T |
|
| Q |
351 |
caatatatttgtgtcttttttctgtagcactgatattct |
389 |
Q |
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||||||||||||||| |||||| |||||||||||||||| |
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| T |
46130735 |
caatatatttgtgtcgtttttcggtagcactgatattct |
46130773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 46130422 - 46130532
Alignment:
| Q |
4 |
ctaactctggaggatcaggttgggaaaagtttgcaaggatagcatgtgcagtaaatttagcatatcctatataatttcataaatataatgaatttagaca |
103 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
46130422 |
ctaactcttgaggatcaggttgggaaaagtttgcaaggatagcatgtgcagtaaatttagcatatcctatataatttaataaatataatgaatttagaaa |
46130521 |
T |
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| Q |
104 |
ttgttttgtta |
114 |
Q |
| |
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| ||||||||| |
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| T |
46130522 |
tggttttgtta |
46130532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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