View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13070_low_14 (Length: 378)
Name: NF13070_low_14
Description: NF13070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13070_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 4 - 374
Target Start/End: Original strand, 30033676 - 30034038
Alignment:
| Q |
4 |
gaacctcctctttaacc-gtgtctgcagatgttatgttttgagggagatagtttcaaatagatttcggcttgcagaaaattcaattcatggccttcacaa |
102 |
Q |
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| T |
30033676 |
gaacctcctctttaacctgtgtctgcagatgttttgttttgatggaggtactttcaaatagacttcgacttgcagaaaattcaattcatgaccttcacaa |
30033775 |
T |
|
| Q |
103 |
tcacaaccacctccattgttggaggaaaagtaactattaggagcaaatttacctaattatttcgaacaaagttttgaacttaatttaggcatcaagcttc |
202 |
Q |
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| T |
30033776 |
tcacaaccacctccattgttggaggaagagtaactattaggagcaaatttatctaattatttggaacaaagttctgaatttaatttaggcatcaagcttc |
30033875 |
T |
|
| Q |
203 |
tctcgaattttaattagatacctcttatcaatatttttcacgttaattaacaaatgaaaattagaacaggttgggtatttcatacatcaaacacaatgca |
302 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
30033876 |
tctcgaattttaattagatacctcctatcaata-ttttcacgttaattaacaaatgaaaataagaa--------gtatttcatacatcaaacacaatgca |
30033966 |
T |
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| Q |
303 |
tttagagtccatcgtcttatcttattgagtaatgaaaagaatggttgacatggaaatggtggaaggtctgtg |
374 |
Q |
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| T |
30033967 |
tttagagtccatcgtcttatctcattgagtaattaaaagaatgtttgagatggaaatggtggaaggtctgtg |
30034038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 4 - 374
Target Start/End: Complemental strand, 23147573 - 23147199
Alignment:
| Q |
4 |
gaacctcctctttaacc-gtgtctgcagatgttatgttttgagggagatagtttcaaatagatttcggcttgcagaaaattcaattcatggccttcacaa |
102 |
Q |
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| T |
23147573 |
gaacctcctctataacctgtgtctgcagatgttttgttttgatggaggtagtttcgaatagatttcaacttgcaaaaaattcaattcatggccttaacaa |
23147474 |
T |
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| Q |
103 |
tcacaaccacctccattgttggaggaaaagtaactattaggagcaaatttacctaattatttcgaacaaagttttgaacttaatttaggcatcaagcttc |
202 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||| ||||||||| |||||||| | |||||||||| |||| ||||||||||||||||||||| |
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| T |
23147473 |
tcacaaccgcctccattgttggaggaagagtaactattaggggcaaatttatctaattatatggaacaaagttatgaatttaatttaggcatcaagcttc |
23147374 |
T |
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| Q |
203 |
tctcgaattttaattagatacctcttatcaatatttttcacgtta---attaacaaatgaaaattagaacaggttgggtatttcatacatcaaacacaat |
299 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
23147373 |
tctcgaattttaattagatacctcatatcaatatttttcacgttaattattaacaaatgaaaataagaacacgttgggtatttcatacatcaaacacaat |
23147274 |
T |
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| Q |
300 |
gcatttagagtccatcgtcttatcttattgagtaatgaaaagaatggttgacatggaaatggtggaaggtctgtg |
374 |
Q |
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|||||||||||| ||| |||||| | |||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
23147273 |
gcatttagagtcaatcttcttatgtcattgagtaattaaaagaatgtttgacatggaaatggtggaaggtctgtg |
23147199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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