View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13070_low_16 (Length: 326)
Name: NF13070_low_16
Description: NF13070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13070_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 43179438 - 43179727
Alignment:
| Q |
18 |
ttctagattaaccatgatcagtttggttctatctgttctcataatagggagtgccaatgcacaactttctacaaacttttactcaaaaacttgtcccaaa |
117 |
Q |
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| T |
43179438 |
ttctagattaaccatgatcagtttagttctatctgttctcataatagggagtgccaatgcacaactttctacaaacttttactcaaaaacttgtcccaaa |
43179537 |
T |
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| Q |
118 |
ctctctaccacagtgaaatccacactgcaaactgccatatcaaaggaggcccgaatgggtgcctctatcctccgcttgttcttccacgattgctttgtca |
217 |
Q |
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| T |
43179538 |
ctctctaccacagtgaaatccacactgcaaactgccatatcaaaggaggcccgaatgggtgcctctatcctccgcttgttcttccacgattgctttgtca |
43179637 |
T |
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| Q |
218 |
atgtaagtgcatatttgattcaagtgattctaaatatttaaaattaattttgatatgttttgtggttctcaattaaaaatgattttgtct |
307 |
Q |
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| T |
43179638 |
atgtaagtgcatatttgattcaagtgattctaaatatttaaaattaattttgatatgttttatggttctcaattaaaaatgattttgtct |
43179727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 43193888 - 43194094
Alignment:
| Q |
18 |
ttctagattaaccatgatcagtttggttctatctgttctcataatagggagtgccaatgcacaactttctacaaacttttactcaaaaacttgtcccaaa |
117 |
Q |
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| T |
43193888 |
ttctagattaaccatgatcagtttggttctatttgtcctcataatagggagtgccaatgcacaactttctacaagtttttactcaagttcttgtcccaaa |
43193987 |
T |
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| Q |
118 |
ctctctaccacagtgaaatccacactgcaaactgccatatcaaaggaggcccgaatgggtgcctctatcctccgcttgttcttccacgattgctttgtca |
217 |
Q |
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| T |
43193988 |
ctctcttccactgttcaatccacagtgcaatccgccatatcaaacgaggcccgaatgggtgcttccatcctccgattgttctttcacgattgctttgtca |
43194087 |
T |
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| Q |
218 |
atgtaag |
224 |
Q |
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| T |
43194088 |
atgtaag |
43194094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 43186604 - 43186810
Alignment:
| Q |
18 |
ttctagattaaccatgatcagtttggttctatctgttctcataatagggagtgccaatgcacaactttctacaaacttttactcaaaaacttgtcccaaa |
117 |
Q |
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||||||| |||| ||| ||||||||||||||| ||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43186604 |
ttctagaataacaatgttcagtttggttctatttgtcctcataatagggagtgtcaatgcacaactctctacaaacttttactcaaaaacttgtcccaaa |
43186703 |
T |
|
| Q |
118 |
ctctctaccacagtgaaatccacactgcaaactgccatatcaaaggaggcccgaatgggtgcctctatcctccgcttgttcttccacgattgctttgtca |
217 |
Q |
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| T |
43186704 |
ctctcttccattgtccaacgtcaagtgcaatccgccatatcaaaggaggcacgaattggtgcttctatcctccgcttgttcttccacgattgctttgtca |
43186803 |
T |
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| Q |
218 |
atgtaag |
224 |
Q |
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||||||| |
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| T |
43186804 |
atgtaag |
43186810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 12042920 - 12042988
Alignment:
| Q |
242 |
tgattctaaatatttaaaattaattttgatatgttttgtggttctcaattaaaaatgattttgtctttg |
310 |
Q |
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| T |
12042920 |
tgattctaaatacttaaaattgattttgatatatttagagattttcaattaaaattaattttatctttg |
12042988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 36189572 - 36189645
Alignment:
| Q |
149 |
ctgccatatcaaaggaggcccgaatgggtgcctctatcctccgcttgttcttccacgattgctttgtcaatgta |
222 |
Q |
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| T |
36189572 |
ctgccatatcaaaagagactcgcatgggtgcttctcttctgcgtttgttcttccacgattgctttgttaatgta |
36189645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 35276968 - 35276902
Alignment:
| Q |
159 |
aaaggaggcccgaatgggtgcctctatcctccgcttgttcttccacgattgctttgtcaatgtaagt |
225 |
Q |
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| T |
35276968 |
aaaggaagcccggatgggggcttctatacttcgattgttcttccatgattgctttgtaaatgtaagt |
35276902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 35282141 - 35282092
Alignment:
| Q |
175 |
ggtgcctctatcctccgcttgttcttccacgattgctttgtcaatgtaag |
224 |
Q |
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||||| ||||| || || ||||||||||||||||||||||| |||||||| |
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| T |
35282141 |
ggtgcttctatacttcgtttgttcttccacgattgctttgtaaatgtaag |
35282092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 35290986 - 35290930
Alignment:
| Q |
169 |
cgaatgggtgcctctatcctccgcttgttcttccacgattgctttgtcaatgtaagt |
225 |
Q |
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| T |
35290986 |
cgaattggtgcttctatacttcgtttgttcttccatgattgctttgtaaatgtaagt |
35290930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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