View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13070_low_17 (Length: 318)
Name: NF13070_low_17
Description: NF13070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13070_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 2133676 - 2133393
Alignment:
| Q |
20 |
caaatcacataactttcggaacgtatcacacaattctcgcttcaatggcttctcgcgtcggcatcactaatggcacctcttctcctttaaactcttcacg |
119 |
Q |
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| T |
2133676 |
caaatcacataactttcggaacgtatcacacaattctcgcttcaatggcttctcgcgtcggcatcactaatggcacctcttctcctttaaactcttcacg |
2133577 |
T |
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| Q |
120 |
ttttctatcaccttctaagaattcttcattccaaacccaaaacggtagtaattctaattctgcttctctcatgacgcaaaacaaaaccgttctagttacc |
219 |
Q |
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| T |
2133576 |
ttttctatcaccttctaagaattcttcattccaaacccaaaacggtagtaattctaattctgcttctctcatgacgcaaaacaaaaccgttctagttacc |
2133477 |
T |
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| Q |
220 |
ggcggtgccggttacatcggtagccacaccgttcttcagctcttactcggcggtttcaaaactgtcatcgttgataatcttgat |
303 |
Q |
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| T |
2133476 |
ggcggtgccggttacatcggtagccacaccgttcttcagctcttactcggcggtttcaaaactgtcatcgttgataatcttgat |
2133393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 2129238 - 2129134
Alignment:
| Q |
199 |
aacaaaaccgttctagttaccggcggtgccggttacatcggtagccacaccgttcttcagctcttactcggcggtttcaaaactgtcatcgttgataatc |
298 |
Q |
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| T |
2129238 |
aacaaaaccgtactcgttaccggtggtgccggttacattggtagccacaccgttcttcaactcttactcggtggtttcaagtccatcgtcgttgataatc |
2129139 |
T |
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| Q |
299 |
ttgat |
303 |
Q |
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| T |
2129138 |
ttgat |
2129134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 279
Target Start/End: Original strand, 42028299 - 42028380
Alignment:
| Q |
198 |
aaacaaaaccgttctagttaccggcggtgccggttacatcggtagccacaccgttcttcagctcttactcggcggtttcaaa |
279 |
Q |
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|||||||||| |||| ||||||||||| |||||||||||||| |||||||| || || ||||| | |||||||||| |||| |
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| T |
42028299 |
aaacaaaaccattctggttaccggcggagccggttacatcggcagccacacagtcctccagcttcttctcggcggttacaaa |
42028380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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