View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13070_low_19 (Length: 280)
Name: NF13070_low_19
Description: NF13070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13070_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 46703108 - 46702848
Alignment:
| Q |
1 |
ggagaaagtgcaccattatttaaaacaagatcccttgcggtcagggaattgccagcaatattacctaatgcccataatgcctgttcaatacatgagacat |
100 |
Q |
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| T |
46703108 |
ggagaaagtgcaccattatttaaaacaagatcccttgcggtcagggaattgccagcaatattacctaatgcccataatgcctgttcaatacatgagacat |
46703009 |
T |
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| Q |
101 |
tgaaattctgtaagggatcaacacatacatagatacatgcatacacaatggttttctcaatgcaattatgccaagagattgaagaagacatcacctgttc |
200 |
Q |
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| T |
46703008 |
tgaaattctgtaagggatcaacacatacatagatacatgcatacacaatggttttctcaatgcaattatgccaagagattgaagaagacatcacctgttc |
46702909 |
T |
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| Q |
201 |
tttgccgtcatcacaaccagagctcagaagctgcacaagcagaggaacagcaccatgttca |
261 |
Q |
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| T |
46702908 |
tttgccgtcatcacaaccagagctcagaagctgcacaagcagaggaacagcaccatgttca |
46702848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 46124315 - 46124055
Alignment:
| Q |
1 |
ggagaaagtgcaccattatttaaaacaagatcccttgcggtcagggaattgccagcaatattacctaatgcccataatgcctgttcaatacatgagacat |
100 |
Q |
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| T |
46124315 |
ggagaaagtgcaccatgatttaaaacaatatcccttgcggtcagggaattgccagcaatattacctaatgcccataatgcctgttcaatacatgagacat |
46124216 |
T |
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| Q |
101 |
tgaaattctgtaagggatcaacacatacatagatacatgcatacacaatggttttctcaatgcaattatgccaagagattgaagaagacatcacctgttc |
200 |
Q |
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| T |
46124215 |
tgaaattgtgtaagcgatcgactcatacatagatacatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaagacatcacctgttc |
46124116 |
T |
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| Q |
201 |
tttgccgtcatcacaaccagagctcagaagctgcacaagcagaggaacagcaccatgttca |
261 |
Q |
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| T |
46124115 |
tttgccgtcatcactgccagagctcagaagcttcacaagcagaggaacagcaccatgttca |
46124055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 46130324 - 46130064
Alignment:
| Q |
1 |
ggagaaagtgcaccattatttaaaacaagatcccttgcggtcagggaattgccagcaatattacctaatgcccataatgcctgttcaatacatgagacat |
100 |
Q |
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|||| ||||||||||| ||||||||||| |||| | |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46130324 |
ggaggaagtgcaccatgatttaaaacaacatccttcgcggtctcagaactaccagcaatattacctaatgcccataatgcctgttcaatacatgagacat |
46130225 |
T |
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| Q |
101 |
tgaaattctgtaagggatcaacacatacatagatacatgcatacacaatggttttctcaatgcaattatgccaagagattgaagaagacatcacctgttc |
200 |
Q |
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| T |
46130224 |
tgaaattgtgtaagcgatcgactcatacatagatacatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaagacatcacctgttc |
46130125 |
T |
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| Q |
201 |
tttgccgtcatcacaaccagagctcagaagctgcacaagcagaggaacagcaccatgttca |
261 |
Q |
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|||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
46130124 |
tttgccgtcatcactaccagagctcagaagcttcacaaggagaggaacagcaccatgttca |
46130064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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