View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13070_low_4 (Length: 610)
Name: NF13070_low_4
Description: NF13070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13070_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 560; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 12 - 591
Target Start/End: Original strand, 2131421 - 2132000
Alignment:
| Q |
12 |
atggacatcatctaaatcaacaacatgaatgtaatcccgaacctgagaataaggtaagaactatccagtaagatccatagtgaagaaatcaaaaatatac |
111 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2131421 |
atggccatcagctaaatcaacaacatgaatgtaatcccgaacctgagaataaggtaagaactatccagtaagatccatagtgaagaaataaaaaatatac |
2131520 |
T |
|
| Q |
112 |
cttaaaaatggtaaataaatgcatgcacccaacagaaccatccaatgaggacagacagtttgtacaagcaaaatttctaacagggtacaaacgggatgac |
211 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2131521 |
cttaaaaatggtaaataaatgcatgcaaccaacagaaccatccaatgaggacagacagtttgtacaagcaaaatttctaacagggtacaaacgggatgac |
2131620 |
T |
|
| Q |
212 |
gaagagcactgatgcacatgaaataatcaaaacggaaaagttgaagtgaatgataacataccccagtaccatcaactgttttataatcatttccaaaaac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2131621 |
gaagagcactgatgcacatgaaataatcaaaacggaaaagttgaagtgaatgataacataccccagtaccatcaactgttttataatcatttccaaaaac |
2131720 |
T |
|
| Q |
312 |
tgtcagtgcaggacgtctgccaaccgctacttgctgaataaatggcataagattatttggaatcccgtgaggatcctccccaatataaccactagggtgt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2131721 |
tgtcagtgcaggacgtctgccaaccgctacttgctgaataaatggcataagattatttggaatcccgtgaggatcctccccaatataaccactagggtgt |
2131820 |
T |
|
| Q |
412 |
gcacccactgggttgaagtatctcaataacattattttccaatctggatcagcacgattgacatcacgacagatttcttcaatggtgagctgaatgagaa |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2131821 |
gcacccactgggttgaagtatctcaataacattattttccaatctggatcagcacgattgacatcacgacagatttcttcaatggtgagctgaatgagaa |
2131920 |
T |
|
| Q |
512 |
acatctcatcagtaaactaattaaaatgaagatcttttttcttctagtaaaaacagaaaatcattcaaacaaacagaaga |
591 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2131921 |
acatctcatcagtaaactaattaaaatgaagatcttttttcttctaataaaaacagaaaatcattcaaacaaacagaaga |
2132000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 262 - 523
Target Start/End: Original strand, 2127212 - 2127473
Alignment:
| Q |
262 |
tgataacataccccagtaccatcaactgttttataatcatttccaaaaactgtcagtgcaggacgtctgccaaccgctacttgctgaataaatggcataa |
361 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||| | |
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| T |
2127212 |
tgataacataccccagtaccatcaactgtattataatcatttccaaaaattgtcagtgcaggccgtctgccaaccgctacttgctgaatgaatggcatga |
2127311 |
T |
|
| Q |
362 |
gattatttggaatcccgtgaggatcctccccaatataaccactagggtgtgcacccactgggttgaagtatctcaataacattattttccaatctggatc |
461 |
Q |
| |
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|||| ||||||| || |||||||||| ||||||||||||||||||||||||||||||||||| || |||||| |||| ||||||||||| ||||| || |
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| T |
2127312 |
gattgtttggaactccacgaggatcctctccaatataaccactagggtgtgcacccactgggttaaaatatctcgataatattattttccagtctggctc |
2127411 |
T |
|
| Q |
462 |
agcacgattgacatcacgacagatttcttcaatggtgagctgaatgagaaacatctcatcag |
523 |
Q |
| |
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|||||||| ||||||||||| ||||||||||| || ||||| ||||||| ||||| ||||| |
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| T |
2127412 |
agcacgatgaacatcacgacaaatttcttcaattgtaagctgcatgagaagcatcttatcag |
2127473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 23 - 188
Target Start/End: Original strand, 2126869 - 2127035
Alignment:
| Q |
23 |
ctaaatcaacaacatgaatgtaatcccgaacctgagaataaggtaagaactatccagtaagatccatagtgaagaaatcaaaaatataccttaaaaatgg |
122 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||| |||| ||||| ||||||| || || ||||||||||| || | ||| | ||||| |
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| T |
2126869 |
ctaaatcaacaacatgaatgaaatcccgaacctaagaataaggtgagaatcatccaataagatcaatggtaaagaaatcaaaggtagatctttagaatgg |
2126968 |
T |
|
| Q |
123 |
taaataaatgcatgcaccc-aacagaaccatccaatgaggacagacagtttgtacaagcaaaatttc |
188 |
Q |
| |
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|||||||| || |||||| |||||||| |||| || ||||||| ||| ||| ||||||||||||| |
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| T |
2126969 |
aaaataaatacaggcaccctaacagaacaatccgataaggacaggtagtatgttcaagcaaaatttc |
2127035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 266 - 495
Target Start/End: Complemental strand, 42030620 - 42030391
Alignment:
| Q |
266 |
aacataccccagtaccatcaactgttttataatcatttccaaaaactgtcagtgcaggacgtctgccaaccgctacttgctgaataaatggcataagatt |
365 |
Q |
| |
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||||||| ||||| |||||| ||| ||||||| ||||||||||||||| ||||| ||||||||||| || |||||||||| ||| ||||| || || |
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| T |
42030620 |
aacatactccagttccatcacttgtgctataatctgttccaaaaactgtcaatgcagagcgtctgccaactgcaacttgctgaacaaaaggcatgaggtt |
42030521 |
T |
|
| Q |
366 |
atttggaatcccgtgaggatcctccccaatataaccactagggtgtgcacccactgggttgaagtatctcaataacattattttccaatctggatcagca |
465 |
Q |
| |
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|| ||||| ||| |||||||||| ||||||| |||||| || |||||||| || ||||||||||||||||| | |||||||||| ||||||||| | |
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| T |
42030520 |
gttgggaattccgcgaggatcctcaccaatatgaccactgggatgtgcaccaacggggttgaagtatctcaacagtgttattttccatcctggatcagaa |
42030421 |
T |
|
| Q |
466 |
cgattgacatcacgacagatttcttcaatg |
495 |
Q |
| |
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|| | || ||||||||| |||||||||||| |
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| T |
42030420 |
cggtagatatcacgacaaatttcttcaatg |
42030391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 41807742 - 41807785
Alignment:
| Q |
17 |
catcatctaaatcaacaacatgaatgtaatcccgaacctgagaa |
60 |
Q |
| |
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||||| ||||||||||||||||||||||||| || ||||||||| |
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| T |
41807742 |
catcagctaaatcaacaacatgaatgtaatcacggacctgagaa |
41807785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 42030903 - 42030860
Alignment:
| Q |
17 |
catcatctaaatcaacaacatgaatgtaatcccgaacctgagaa |
60 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || ||||||||| |
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| T |
42030903 |
catcagctaaatcaacaacatgaatgtaatcacggacctgagaa |
42030860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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