View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13070_low_7 (Length: 528)
Name: NF13070_low_7
Description: NF13070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13070_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 19 - 522
Target Start/End: Original strand, 9278662 - 9279165
Alignment:
| Q |
19 |
aactttcactgatattttccatgaacaatttctagtattagaggttcctcgtcaaacaatatgcaatgaccattgtcccttttccatttaatttacaata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9278662 |
aactttcactgatattttccatgaacaatttctagtattagaggttcctcgtcaaacaatatgcaatgaccattgtcccttttccatttaatttacaata |
9278761 |
T |
|
| Q |
119 |
atatatgctccattataccaattctgactttagaaagagcaattctctgtaataaatcatatggtttatacaaccactatctatgactatatgccacctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9278762 |
atatatgctccattataccaattctgactttagaaagagcaattctctgtaataaatcatatggtttatacaaccactatctatgactatatgccacctt |
9278861 |
T |
|
| Q |
219 |
tcagtggagctattggcagtaaaacatgttacagcaggcaattgtggttagtccccgacaaccttaacttctccatgcgtcgtaattgaccacgcttatg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9278862 |
tcagtggagctattggcagtaaaacatgctacagcaggcaattgtggttagtccccgacaaccttaacttctccatgcgtcgtaattgaccacgcttatg |
9278961 |
T |
|
| Q |
319 |
acaccaagcatttggccttcaccatcnnnnnnnggtgtgattaattttcttgccatgaggccatgatggaaaaaccttagtattattgttttggttgttg |
418 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9278962 |
acaccaagcatttggccttcgccatctttttttggtgtgattaatttccttgccatgaggccatgatggaaaaaccttagtattattgttttggttgttg |
9279061 |
T |
|
| Q |
419 |
atcttactattttcaaaaccacattgtttgttgttattaatctgtaatttgacttgaaatgcaccatacatagatccatcctgcctcgttagccttcttc |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9279062 |
atcttactattttcaaaaccacattgtttgttgttattaatctgtaatttgacttgaaatgcaccatacatagatccatcctgcctcgttagccttcttc |
9279161 |
T |
|
| Q |
519 |
tctc |
522 |
Q |
| |
|
|||| |
|
|
| T |
9279162 |
tctc |
9279165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University