View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13070_low_8 (Length: 496)
Name: NF13070_low_8
Description: NF13070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13070_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 481
Target Start/End: Original strand, 14771130 - 14771593
Alignment:
| Q |
20 |
atttaaacataaacgatacatatgatggaaaaataattaatctttatataaaaattaattcattttgttaagtttgaaaataacactattgtacaagatt |
119 |
Q |
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| T |
14771130 |
atttatacataaaagatatatatgatgtaaaaataactaatctttatataaaaattaattcattttgtttcgtttgaaaataacactattgtacaagatt |
14771229 |
T |
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| Q |
120 |
tttaatttttaatattttgaactctcgattttaaatggattatgaaaaatgttaactttgtgtaaatttcagggaaaagttagagattccacgtgataaa |
219 |
Q |
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| T |
14771230 |
tttaatttttaatattttgaactctcgattttaaatgaattatgaaaaatgttaactttgtgggtatttcagggaaaagatagagattccacgtgataaa |
14771329 |
T |
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| Q |
220 |
ccttacatcatactaaaaggagcaggaaagaggaaaaccattgttgaatgggatgatcatgcaccaatctcacaaagtgctacattttcctcaatggctg |
319 |
Q |
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| T |
14771330 |
ccttacatcatactaaagggagcaggaaagaggaaaaccattgttgaatgggatgatcatgcaccaatctcacaaagtgctacattttcctcaatggctg |
14771429 |
T |
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| Q |
320 |
ataatgttgtcgtcaaatccatcagtttcagggtgagaaataatctaccaattactaattgttttcaattagagtgtct--nnnnnnntttcatttcatt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
14771430 |
ataatgttgtcgtcaaatccatcagtttcagggtgagaaataatctaccaattactaattgttttcatttagagtgtctaagaaaaattttcatttcatt |
14771529 |
T |
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| Q |
418 |
tatgccttttcttatgatgactattagctgcttagatgtttatgtgtgactatgcgtctttaaa |
481 |
Q |
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| T |
14771530 |
tatgccttttcttatgatgactattagctgcttagatgtttatgtgtgactatgtatctttaaa |
14771593 |
T |
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