View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13071_high_1 (Length: 1281)
Name: NF13071_high_1
Description: NF13071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13071_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 865; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 865; E-Value: 0
Query Start/End: Original strand, 18 - 902
Target Start/End: Original strand, 44865260 - 44866144
Alignment:
| Q |
18 |
cactgtatcacgctattgacgacatagagcatgattaaaattgaataattatgtgtcatgaaagtcccctcatacttatttcgaacctggtgttagtagg |
117 |
Q |
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| T |
44865260 |
cactgtatcacgctattgacgacatagagcatgattaaaattgaataattatgtgtcatgaaagtcccctcatacttatttcgaacctggtgttagtagg |
44865359 |
T |
|
| Q |
118 |
ctggtaacaaagagtcttgtttcataaaatatgaataacaaaccaacagtatggatccatcttacataagagttttcattcaagtctcaacacgaaagag |
217 |
Q |
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| T |
44865360 |
ctggtaacagagagtcttgtttcataaaatatgaataacaaaccaacagtatggatccatcttacataagagttttcattcaagtctcaacacgaaagag |
44865459 |
T |
|
| Q |
218 |
ttcgttttcagtgttctgactttgacttgaatgaaatgccctagcttatttcactgatcacaatcacaaattgtacagtaaaagtgtaaagtaaaatgat |
317 |
Q |
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| T |
44865460 |
ttcgttttcagtgttatgactttgacttgaatgaaatgccctagcttatttcactgatcacaatcacaaattgtacagtaaaagtgtaaagtaaaatgat |
44865559 |
T |
|
| Q |
318 |
caagcataaccatgagtattatatatcctaaattcccaaaggcatgtatacaatacatacctgaacacctgctagaaaggctcccggaaacgcgaagaag |
417 |
Q |
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| T |
44865560 |
caagcataaccatgagtattatatatcctaaattcccaaaggcatgtatacaatacatacctgaacacctgctagaaaggctcccggaaacgcgaagaag |
44865659 |
T |
|
| Q |
418 |
gtgcgagatttctccaggtttgctcaaacgaaccaagttcgcaatatcctcattcctaaaaacaccatgaatcccaaagcacgcaagaaaaagagtcaaa |
517 |
Q |
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| T |
44865660 |
gtgcgagatttctccaggtttgctcaaacgaaccaagttcgcaatatcctcattcctaaaaacaccatgaatcccaaagcacgcaagaaaaagagtcaaa |
44865759 |
T |
|
| Q |
518 |
cctctggcatccatttcacttgccatagccacaccaccttcaacaacaagtctcttcctccacgcacccgctgcatctgcagcttctgccttcagtttac |
617 |
Q |
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| T |
44865760 |
cctctggcatccatttcacttgccatagccacaccaccttcaacaacaagtctcttcctccacgcacccgctgcatctgcagcttctgccttcagtttac |
44865859 |
T |
|
| Q |
618 |
gttccatttttgcttcactttcaacacaaccagacatcagatagtattccaaaaccaaaattgaagcttgccttgcagtaatcatcggtgagtttgttgt |
717 |
Q |
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| T |
44865860 |
gttccatttttgcttcactttcaacacagccagacatcagatagtattccaaaaccaaaattgaagcttgccttgcagtaatcatcggtgagtttgttgt |
44865959 |
T |
|
| Q |
718 |
ataggctttgcttccttgaaggtaaaatctaccaatgcattcaaacaccaattttgccggttccggcgcctttttcagcgccaccgggattttttcctta |
817 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
44865960 |
ataggctttgcttccttgaaggtaaaatctaccaatgcattcaaacaccaattttgccggttccggcgcctttttcagtgccaccgggattttttcctca |
44866059 |
T |
|
| Q |
818 |
agcgacggcgtttcagatagatgcataagtatatactttcgcaaaccacggctattcatagttttgcacagacagtgaggctcac |
902 |
Q |
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| T |
44866060 |
agcgacggcgtttcagatagatgcataagtatatactttcgcaaaccacggctattcatagttttgcacagacagtgaggctcac |
44866144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 222; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-121
Query Start/End: Original strand, 1002 - 1240
Target Start/End: Original strand, 52512415 - 52512657
Alignment:
| Q |
1002 |
atatgaatgcaattaattaagttaatgatgag----tgagtgagtaattgaaattgaattgaaactcgtatataaacatacatacataccttggaggaag |
1097 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52512415 |
atatgaatgcaattaattaagttaatgatgagtgagtgagtgagtaattgaaattgaattgaaactcatatataaacatacatacataccttggaggaag |
52512514 |
T |
|
| Q |
1098 |
aatgatatccttgattttgaggaagagtggatttaacaataaaacaacgcgtccttcctgtttgtttgatggaagttggaggaaggcatcgaggaataac |
1197 |
Q |
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| T |
52512515 |
aatgatatccttgattttgaggaagagtggatttaacaataaaacaacgcgtccttcctgtttgtttgatggaagttggaggaaggcatcgaggaataac |
52512614 |
T |
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| Q |
1198 |
agacgcctgcaaattgcaatccattgagatatgaagaatagag |
1240 |
Q |
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| T |
52512615 |
agacgcctgcaaattgcaatccattgagatatgaagaatagag |
52512657 |
T |
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