View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13071_high_4 (Length: 449)
Name: NF13071_high_4
Description: NF13071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13071_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 6564278 - 6564040
Alignment:
| Q |
18 |
ataatgactaatgaaagtgttacagttgttgcttgtgtaaagtaccaatatgggataatgatgacaacaatgaaacaaattctgaactgagatgtttaat |
117 |
Q |
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| T |
6564278 |
ataatgactaatgaaagtgttacagttgttgcttgtgtaaagtaccaatatgggataatgatgacaacaatgaaacaaattctgaactgagatgtttaat |
6564179 |
T |
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| Q |
118 |
gatatttattactgtgttacatgcatattgctaacaattaaatgttgttgacagacatagataaggacagaaaaattccttttcttagtgaaactgctac |
217 |
Q |
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| T |
6564178 |
gatatttattactgtgttacatgcatattgctaacaattaaatgttgttgacagacatagataaggacataaaaattccttttcttagtgaaactgctac |
6564079 |
T |
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| Q |
218 |
tatgcgtaattaatgatacttcaaggatgggtgatgctt |
256 |
Q |
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| T |
6564078 |
tatgcgtaattaatgatacttcaaggatgggtgatgctt |
6564040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 362 - 439
Target Start/End: Complemental strand, 6563937 - 6563860
Alignment:
| Q |
362 |
ttgctacaaattacattttttaaagttaataattgaggtatttaggattcgaacctcatcatctatatatagtataat |
439 |
Q |
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| T |
6563937 |
ttgctacaaattacattttttaaagttaataattaaggtatttaggattcgaacctcatcatctatatataatataat |
6563860 |
T |
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