View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13071_high_6 (Length: 367)
Name: NF13071_high_6
Description: NF13071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13071_high_6 |
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| [»] scaffold0370 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 352
Target Start/End: Complemental strand, 38690660 - 38690318
Alignment:
| Q |
10 |
aagaatataattctgcatttatgtcttcatgttctttcacacaatatctaattctggtctcagattccttccgttcacatagatactaccaaaaaatata |
109 |
Q |
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| T |
38690660 |
aagaatataattttgcatttatgtcttcatgttctttcacacaatatctaattctggtctcagattccttccgttcacatagatactaccaaaaaatata |
38690561 |
T |
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| Q |
110 |
aaatatctgtcatactctttgataacaacttaaagacatgaataagctgcggctaaaccaaagccaattattatttaccttaatatgatattttatagtt |
209 |
Q |
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| T |
38690560 |
aaatatctgtcatactctttgataacaacttaaagacatgaataagctgcggctaaaccaaagccaattattatttaccttaatatgatattttatagtt |
38690461 |
T |
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| Q |
210 |
tgcttcaagcattcataattggaaatatttcccttctcaaaatcattaccagaatgtatttccatatgtttgacttgaaattgttcaatttctatcacaa |
309 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
38690460 |
tgcttcaagcattcatagttggaaatatttcccttctcaaaatcattaccagaatgtctttccatatgtttgacttgaaattgttcaatttctatcacga |
38690361 |
T |
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| Q |
310 |
gcttatccaaatcattcttccgtttaatctgctccaagttttt |
352 |
Q |
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| T |
38690360 |
gcttatccaaatcattcttccgtttaatctgctccacgttttt |
38690318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 38637810 - 38637712
Alignment:
| Q |
212 |
cttcaagcattcataattggaaatatttcccttctcaaaatcattaccagaatgtatttccatatgtttgacttgaaattgttcaatttctatcacaag |
310 |
Q |
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| T |
38637810 |
cttcaaggattcataactggaaatatttgccttcacagaatcattaccagaaactctttccagatgttggattttgaatatttcaatttctatcacaag |
38637712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 301
Target Start/End: Complemental strand, 38589694 - 38589593
Alignment:
| Q |
200 |
ttttatagtttgcttcaagcattcataattggaaatatttcccttctcaaaatcattaccagaatgtatttccatatgtttgacttgaaattgttcaatt |
299 |
Q |
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||||||| ||| ||||||| | ||||| ||| |||||||||||||| || ||||||||| |||| | |||||| || || || |||||||||||||||| |
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| T |
38589694 |
ttttataattttcttcaaggagtcatagttgtaaatatttcccttcacagaatcattactagaagctctttccaaatattggatttgaaattgttcaatt |
38589595 |
T |
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| Q |
300 |
tc |
301 |
Q |
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| T |
38589594 |
tc |
38589593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 38589799 - 38589744
Alignment:
| Q |
102 |
aaaatataaaatatctgtcatactctttgataacaacttaaagacatgaataagct |
157 |
Q |
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| T |
38589799 |
aaaatagaaaatatctatcagactctttgataacacctttaagacatgaataagct |
38589744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 302
Target Start/End: Complemental strand, 38633791 - 38633689
Alignment:
| Q |
200 |
ttttatagtttgcttcaagcattcataattggaaatatttcccttctcaaaatcattaccagaatgtatttccatatgtttgacttgaaattgttcaatt |
299 |
Q |
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||||||| ||| ||||||| ||||||| |||||||||||| | || || ||||||||| ||| | ||||||||| || | |||||||||||||||| |
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| T |
38633791 |
ttttataattttcttcaaggattcatagttggaaatattttcttttacaggatcattaccggaagctctttccatatattgaatttgaaattgttcaatt |
38633692 |
T |
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| Q |
300 |
tct |
302 |
Q |
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||| |
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| T |
38633691 |
tct |
38633689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 12986 - 12931
Alignment:
| Q |
103 |
aaatataaaatatctgtcatactctttgataacaacttaaagacatgaataagctg |
158 |
Q |
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||||| ||||||||||||| |||| |||||||| ||| ||||||||||||||||| |
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| T |
12986 |
aaatagaaaatatctgtcacactcactgataacacctttaagacatgaataagctg |
12931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 12847 - 12802
Alignment:
| Q |
268 |
tttccatatgtttgacttgaaattgttcaatttctatcacaagctt |
313 |
Q |
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| T |
12847 |
tttccatatgttggatttggaattgttcaatttctatcacgagctt |
12802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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