View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13071_high_9 (Length: 284)
Name: NF13071_high_9
Description: NF13071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13071_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 35298624 - 35298572
Alignment:
| Q |
12 |
aaagggtgtgcattaacaaaagaaaaaggctagataacgcaaattccaatctc |
64 |
Q |
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| T |
35298624 |
aaagggtgtgcattaacaaaagaaaaaggctagataacgcaaattccaatctc |
35298572 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 26418208 - 26418132
Alignment:
| Q |
101 |
tggatgcaatttttaattggttgatttttatttcgggatgttttcgttataatttccttggttgtgtttaacaatgct |
178 |
Q |
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| T |
26418208 |
tggaagcaatttttaattggttggtttttacatcgggatgctttcgatataa-ttccttggttgtgtttagcaatgct |
26418132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 29481034 - 29480961
Alignment:
| Q |
103 |
gatgcaatttttaattggttgatttttatttcgggatgttttcgttataatttccttggttgtgtttaacaatg |
176 |
Q |
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| T |
29481034 |
gatgcaatttttaattggctaatttctagttggcgatgcattcgttataatttccttcgctgtgtttagcaatg |
29480961 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 40848382 - 40848454
Alignment:
| Q |
104 |
atgcaatttttaattggttgatttttatttcgggatgttttcgttataatttccttggttgtgtttaacaatg |
176 |
Q |
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| T |
40848382 |
atgcaatttttaattggttggtttacagttcacgatgctttcgttataatttccttcgttgtgtttagcaatg |
40848454 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 30856236 - 30856308
Alignment:
| Q |
106 |
gcaatttttaattggttgatttttatttcgggatgttttcgttataatttccttggttgtgtttaacaatgct |
178 |
Q |
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| T |
30856236 |
gcaatttttaattggttgatttttattccaggatactttcgctataatttccttcgctatgtttagcaatgct |
30856308 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 2346981 - 2346913
Alignment:
| Q |
110 |
tttttaattggttgatttttatttcgggatgttttcgttataatttccttggttgtgtttaacaatgct |
178 |
Q |
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| T |
2346981 |
tttttaattggttggtttttatgtcgggatgatttcgctataacacccttcgctgtgtttagcaatgct |
2346913 |
T |
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