View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13071_low_11 (Length: 261)
Name: NF13071_low_11
Description: NF13071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13071_low_11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 4782685 - 4782945
Alignment:
| Q |
1 |
ttatatgcatatcaaaaggaacacaaataaaaagtatggggtgtgtgctataaattcatgggcttataatccagtcaaatataatggaaggaaaccaaat |
100 |
Q |
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| T |
4782685 |
ttatatgcatatcaaaaggaacacaaataaaaagtatggggtgtgtgctataaattcatgggcttataatccagtcaaatataatggaaggaaaccaaat |
4782784 |
T |
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| Q |
101 |
attagttccattttagatcaacaataagttaaagcaagaattatggttgtatgcatatagaatttgtttgtgtgggcattgttgatgttgttttcaacac |
200 |
Q |
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| T |
4782785 |
attagttccattttagatcaacaataagttaaagcaagaattatggttttatgcatatagaatttgtttgtgtgggcattgttgatgttgttttcaacac |
4782884 |
T |
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| Q |
201 |
gtcagttatcctattcaaaattgttaagcataagaaaatgaataaataaatagaaacacat |
261 |
Q |
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| T |
4782885 |
gtcagttatcctattcaaaattgttaagcataagaaaatgaataaataaattgaaacacat |
4782945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 4787431 - 4787515
Alignment:
| Q |
1 |
ttatatgcatatcaaaaggaacacaaataaaaagtatggggtgtgtgctataaattcatgggcttataatccagtcaaatataat |
85 |
Q |
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| T |
4787431 |
ttatatgcatatcaaaaggaacactaataaagagtatggggtgtgtgcaatcaatgaatgggcatataatccagtcaaatataat |
4787515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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