View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13071_low_12 (Length: 254)
Name: NF13071_low_12
Description: NF13071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13071_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 4782938 - 4783030
Alignment:
| Q |
1 |
aaacacatgaaagtttcactcaatgatgtaatacaagtcatgacaataaagtggcaagtgttctgcttatcataaaataatggtggcgaatga |
93 |
Q |
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| T |
4782938 |
aaacacatgaaagtttcactcaatgatgtaatacaagtcatgacaataaagtggcaagtgttctgcttatcataaaataatggtggcgaatga |
4783030 |
T |
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Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 4783089 - 4783172
Alignment:
| Q |
152 |
gttaagtggttataaaatctttcaaggtttcactgccttagggatcaagcaaacaaggacacgtacgataattgttgaaaattgtcca |
239 |
Q |
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| T |
4783089 |
gttaagtggttataaaatctttcaaggtttcactgccttagggatcaagcaaacaaggac----acgataattgttgaaaattgtcca |
4783172 |
T |
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