View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13071_low_13 (Length: 247)
Name: NF13071_low_13
Description: NF13071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13071_low_13 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 13317729 - 13317495
Alignment:
| Q |
18 |
gtgcaaatgcctgttctgggcgctagcttttccgtcatggtagatagatgcccaaggcctcacatggtc----tcgtttactgataaacctcttcccacc |
113 |
Q |
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| T |
13317729 |
gtgcaaatgcctgttctgggcgctagcttttccgtcatggtagatagatgcccaaggcctcacatggtcaagctcgttaactaataaacgtcttcccacc |
13317630 |
T |
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| Q |
114 |
acact-ggattaacaagtcttttgtacaactgatgttgaatatagtgattatatggagtgataccttacttgttccatcaattaagggtgattcactttg |
212 |
Q |
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| T |
13317629 |
acactaggattaacaagtcttttgtacaactgatgttgaatatagtgattatatggagtgataccttacttgttcaatcaattaagggtgattcactttg |
13317530 |
T |
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| Q |
213 |
tattgagattacatggccgacttgtacatgataag |
247 |
Q |
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| T |
13317529 |
tattaagattacatggtcgacttgtacatggtaag |
13317495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 41 - 247
Target Start/End: Original strand, 13307565 - 13307772
Alignment:
| Q |
41 |
tagcttttccgtcatggtagatagatgcccaaggcctcacatggtctcgtttactgataaacctcttcccaccacactgg-attaacaagtcttttgtac |
139 |
Q |
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| T |
13307565 |
tagcttttctgtcatgtcagatagatgcccaaggcctcacatggtctcctgcactgacaaacatcttgcccccacactggcattaacaagtcttttgtac |
13307664 |
T |
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| Q |
140 |
aactgatgttgaatatagtgattatatggagtgataccttacttgttccatcaattaagggtgattcactttgtattgagattacatggccgacttgtac |
239 |
Q |
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| T |
13307665 |
aactggtgttgaatgtagtgactatatggagtgataccttactcgttgcatcaattaagggtgattcacttcgaatcaagattacatggtcgatttgtac |
13307764 |
T |
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| Q |
240 |
atgataag |
247 |
Q |
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| T |
13307765 |
ttgataag |
13307772 |
T |
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