View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13071_low_14 (Length: 245)
Name: NF13071_low_14
Description: NF13071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13071_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 2350913 - 2351129
Alignment:
| Q |
11 |
tagataatacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatggg |
110 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2350913 |
tagatactacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatggg |
2351012 |
T |
|
| Q |
111 |
tcatgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatcca |
210 |
Q |
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| T |
2351013 |
tcgtgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatcca |
2351112 |
T |
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| Q |
211 |
ccggggcataatgtgtt |
227 |
Q |
| |
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||||||||||||||||| |
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| T |
2351113 |
ccggggcataatgtgtt |
2351129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 2303339 - 2303545
Alignment:
| Q |
13 |
gataatacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtc |
112 |
Q |
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|||| ||||||||| ||||||||||||||||||| |||||||| |||||||| || ||||| ||||||||||||| |||||| |||||||||||||| |
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| T |
2303339 |
gatactacttccactactttgcaatggattatggcgaatttggttaagtacccagaagtgcagaggaggcttgtggaggagattcgggaggtgatgggtg |
2303438 |
T |
|
| Q |
113 |
atgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccacc |
212 |
Q |
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| T |
2303439 |
gtgatgagaatggagagaaggaggaagtgaaagaggaagaattgcagaaacttcggtatttgaaatgtgttgttttggaagggttgaggcgtcatccacc |
2303538 |
T |
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| Q |
213 |
ggggcat |
219 |
Q |
| |
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||||||| |
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| T |
2303539 |
ggggcat |
2303545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 30 - 216
Target Start/End: Original strand, 2293743 - 2293929
Alignment:
| Q |
30 |
tttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagag |
129 |
Q |
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|||||| ||||||||||| ||| | ||||||||||| || ||||| |||||||||||||| |||||| |||||||||||||| ||||| |||||||||| |
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| T |
2293743 |
tttgcagtggattatggcgaatgtagtgaagtacccagaagtgcaggggaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagag |
2293842 |
T |
|
| Q |
130 |
aaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccgggg |
216 |
Q |
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|||| |||||||||||||||||| |||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2293843 |
aaggaggaagtgaaagaggaagacttgcagaaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatccaccgggg |
2293929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 37 - 216
Target Start/End: Original strand, 2310081 - 2310260
Alignment:
| Q |
37 |
tggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagagaaggtgg |
136 |
Q |
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||||||||||| ||| ||||||||||||| || ||| | |||||||||||||| |||||| |||||||||||||| ||||| |||||||||||||| || |
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| T |
2310081 |
tggattatggcgaatgtggtgaagtacccagaagtgaaggggaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagagaaggagg |
2310180 |
T |
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| Q |
137 |
aagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccgggg |
216 |
Q |
| |
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|||||||||||||||| ||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
2310181 |
aagtgaaagaggaagacttgcagaaactttggtatttgaagtgtgtggttttggaagggttgaggcgtcatccatcgggg |
2310260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 2326893 - 2327100
Alignment:
| Q |
12 |
agataatacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggt |
111 |
Q |
| |
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||||| ||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||| ||| ||||||||||| | |||||||||||| | |||||| |
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| T |
2326893 |
agatactacttccaccgctttgcattggattatggcgaatttggtgaagtacccggacgttcaaaggaggcttgtgcaggagattagggagttcatgggt |
2326992 |
T |
|
| Q |
112 |
catgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccac |
211 |
Q |
| |
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|||||| || |||||||| |||||||||||||||||| ||||| |||||| |||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
2326993 |
ggtgatggtgttgtagagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatccac |
2327092 |
T |
|
| Q |
212 |
cggggcat |
219 |
Q |
| |
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| |||||| |
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| T |
2327093 |
cagggcat |
2327100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 2330609 - 2330815
Alignment:
| Q |
13 |
gataatacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtc |
112 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| || |||| ||||||||| ||||||| |||||||||||| |
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| T |
2330609 |
gatactacttccaccgctttgcaatggattatggcgaatttggtgaagtacccggacgttcaggggaagcttgtggaggagattacagaggtgatgggtg |
2330708 |
T |
|
| Q |
113 |
atgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccacc |
212 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||| ||||| |||||| |||| |||| || |||||||||||||||||||||||||||||||| |
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| T |
2330709 |
gcgatgatgctggagagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaagtgcgtggttttggaagggttgaggcgtcatccacc |
2330808 |
T |
|
| Q |
213 |
ggggcat |
219 |
Q |
| |
|
|||||| |
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|
| T |
2330809 |
agggcat |
2330815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 2321040 - 2321239
Alignment:
| Q |
13 |
gataatacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtc |
112 |
Q |
| |
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|||| ||||||||| |||||||| ||||||||||| ||||||||||||||||| || ||||| |||||||||||||| |||||| | |||||||||| | |
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| T |
2321040 |
gatactacttccactgctttgcagtggattatggcgaatttggtgaagtacccggaagtgcaggggaggcttgtggaggagattcgtgaggtgatggtta |
2321139 |
T |
|
| Q |
113 |
atgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccacc |
212 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||| | |||||||||||| ||| |||| || ||||||||||||||| |||||||||||||||| |
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| T |
2321140 |
gtgatgacaatggagagaaggaggaagtgaaagaggaaaacttgcagaaacttcgatatttgaagtgcgtggttttggaagggatgaggcgtcatccacc |
2321239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 41127050 - 41127126
Alignment:
| Q |
142 |
aaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggca |
218 |
Q |
| |
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||||||||||| |||||||| || ||||| || |||||| ||||||||||| ||||| |||| ||||||||||| |
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| T |
41127050 |
aaagaggaagacttgcagaacctaccatatctaaagtgtgtgattttggaagggctgaggtgtcacccaccggggca |
41127126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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