View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13071_low_15 (Length: 235)

Name: NF13071_low_15
Description: NF13071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13071_low_15
NF13071_low_15
[»] chr2 (7 HSPs)
chr2 (1-220)||(13501096-13501321)
chr2 (173-220)||(13515077-13515124)
chr2 (1-36)||(43586023-43586058)
chr2 (175-220)||(13485560-13485605)
chr2 (175-220)||(13491999-13492044)
chr2 (1-38)||(31026699-31026736)
chr2 (6-50)||(39399904-39399948)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-72)||(18126-18197)
[»] chr7 (7 HSPs)
chr7 (1-53)||(1885562-1885614)
chr7 (1-36)||(5937439-5937474)
chr7 (1-36)||(44317304-44317339)
chr7 (1-35)||(2144557-2144591)
chr7 (5-51)||(35238206-35238252)
chr7 (64-97)||(13300491-13300524)
chr7 (1-53)||(10702562-10702613)
[»] chr1 (2 HSPs)
chr1 (1-51)||(19637759-19637809)
chr1 (1-32)||(50233411-50233442)
[»] chr6 (7 HSPs)
chr6 (1-38)||(10031574-10031611)
chr6 (5-50)||(23130857-23130902)
chr6 (1-37)||(6751900-6751936)
chr6 (1-53)||(19369806-19369858)
chr6 (1-37)||(29959180-29959216)
chr6 (2-44)||(5579652-5579694)
chr6 (5-35)||(5635910-5635940)
[»] chr8 (4 HSPs)
chr8 (1-53)||(26915258-26915310)
chr8 (1-53)||(42874511-42874563)
chr8 (5-50)||(22600521-22600566)
chr8 (1-38)||(27733851-27733888)
[»] chr4 (6 HSPs)
chr4 (1-53)||(34589724-34589776)
chr4 (1-36)||(13307883-13307918)
chr4 (1-36)||(28663498-28663533)
chr4 (1-72)||(56049847-56049917)
chr4 (3-32)||(9298943-9298972)
chr4 (1-38)||(44362670-44362707)
[»] chr5 (3 HSPs)
chr5 (1-36)||(30080519-30080554)
chr5 (1-38)||(26205778-26205815)
chr5 (10-50)||(309150-309190)
[»] chr3 (2 HSPs)
chr3 (1-47)||(24399661-24399707)
chr3 (1-37)||(14338501-14338537)
[»] scaffold0314 (1 HSPs)
scaffold0314 (1-37)||(8953-8989)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 13501096 - 13501321
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgttttgtgtctggtgtccgtgcttcatagttttagacaaattcttgtat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||  |    
T  13501096 ttacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgtgttgtgtctggtgtctgtgcttcatagttttagacaaattcttg--t 13501193  T
Q  101 accaatttttaaaaacctaaatatatcaagtaataatggtcatgatattaatatgattgtgagatg--------tatgacatgcagatggtgaaaccaag 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  13501194 accaatttttaaaaacctaaatatatcaagtaataatggtcatgatattaatatgattgtgagatgaatctatatatgacatgcagatggtgaaaccaag 13501293  T
Q  193 tatgatttacacaaagtggagttagtag 220  Q
    ||||||||||||||||||||||||||||    
T  13501294 tatgatttacacaaagtggagttagtag 13501321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 13515077 - 13515124
Alignment:
Q  173 atgcagatggtgaaaccaagtatgatttacacaaagtggagttagtag 220  Q
    ||||||||||||| |||||| |||  ||||||||||||||||||||||    
T  13515077 atgcagatggtgagaccaagcatgtgttacacaaagtggagttagtag 13515124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 43586023 - 43586058
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  43586023 ttacattgaattatgtcattttctcaaaattttatc 43586058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 13485560 - 13485605
Alignment:
Q  175 gcagatggtgaaaccaagtatgatttacacaaagtggagttagtag 220  Q
    |||| ||||||||| ||||||||||| ||||||||||| |||||||    
T  13485560 gcaggtggtgaaacaaagtatgatttgcacaaagtggacttagtag 13485605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 13491999 - 13492044
Alignment:
Q  175 gcagatggtgaaaccaagtatgatttacacaaagtggagttagtag 220  Q
    |||| ||||||||| ||||||||||| ||||||||||| |||||||    
T  13491999 gcaggtggtgaaacaaagtatgatttgcacaaagtggacttagtag 13492044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 31026736 - 31026699
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatcgg 38  Q
    |||||||||||||||||||||||||||| | |||||||    
T  31026736 ttacattgaattatgtcattttcttaaattattatcgg 31026699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 39399948 - 39399904
Alignment:
Q  6 ttgaattatgtcattttcttaaaattttatcggcgtcgatgtgtc 50  Q
    ||||||||||||||||||| ||||||| ||||| ||| |||||||    
T  39399948 ttgaattatgtcattttctaaaaatttcatcggtgtcaatgtgtc 39399904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 18126 - 18197
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgttttgtgtctggtgtccgtg 72  Q
    |||||||||||||||| ||||||| ||||||||||||| ||||| ||||| || | ||||||||||||||||    
T  18126 ttacattgaattatgttattttctcaaaattttatcggtgtcgacgtgtcagtgtcgtgtctggtgtccgtg 18197  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 1885614 - 1885562
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgt 53  Q
    |||||||||||||||||||||| | ||||||||||| | ||||||||||||||    
T  1885614 ttacattgaattatgtcattttttcaaaattttatccgtgtcgatgtgtccgt 1885562  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 5937439 - 5937474
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  5937439 ttacattgaattatgtcattttctcaaaattttatc 5937474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 44317304 - 44317339
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatc 36  Q
    |||||||||||||||||||||| |||||||||||||    
T  44317304 ttacattgaattatgtcatttttttaaaattttatc 44317339  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2144557 - 2144591
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  2144557 ttacattgaattatgtcattttctcaaaattttat 2144591  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 35238206 - 35238252
Alignment:
Q  5 attgaattatgtcattttcttaaaattttatcggcgtcgatgtgtcc 51  Q
    |||||||||||||||||||| ||||| ||||||| ||| ||||||||    
T  35238206 attgaattatgtcattttctcaaaatattatcggtgtcaatgtgtcc 35238252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 97
Target Start/End: Original strand, 13300491 - 13300524
Alignment:
Q  64 gtgtccgtgcttcatagttttagacaaattcttg 97  Q
    ||||||||||||||||||||||||||||| ||||    
T  13300491 gtgtccgtgcttcatagttttagacaaatacttg 13300524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10702562 - 10702613
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgt 53  Q
    ||||||||||| |||||||||||| ||||||||||| |  |||||||||||||    
T  10702562 ttacattgaat-atgtcattttctcaaaattttatcagtatcgatgtgtccgt 10702613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 19637809 - 19637759
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtcc 51  Q
    ||||||||||| |||||||||||||||| | ||||||| ||||||||||||    
T  19637809 ttacattgaataatgtcattttcttaaattattatcggtgtcgatgtgtcc 19637759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 50233442 - 50233411
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattt 32  Q
    ||||||||||||||||||||||||||||||||    
T  50233442 ttacattgaattatgtcattttcttaaaattt 50233411  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10031611 - 10031574
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatcgg 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  10031611 ttacattgaattatgtcattttctcaaaattttatcgg 10031574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 23130857 - 23130902
Alignment:
Q  5 attgaattatgtcattttcttaaaattttatcggcgtcgatgtgtc 50  Q
    |||||||||||||||||||||||||| ||| ||||||||| |||||    
T  23130857 attgaattatgtcattttcttaaaatattaccggcgtcgacgtgtc 23130902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6751900 - 6751936
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatcg 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  6751900 ttacattgaattatgtcattttctcaaaattttatcg 6751936  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 19369858 - 19369806
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgt 53  Q
    |||||||||||||||||||||||| ||||||||||| | ||| | ||||||||    
T  19369858 ttacattgaattatgtcattttctcaaaattttatccgtgtcaacgtgtccgt 19369806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29959216 - 29959180
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatcg 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  29959216 ttacattgaattatgtcattttctcaaaattttatcg 29959180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 5579694 - 5579652
Alignment:
Q  2 tacattgaattatgtcattttcttaaaattttatcggcgtcga 44  Q
    ||||||||| ||||||||||||| ||||||||||||| |||||    
T  5579694 tacattgaactatgtcattttctcaaaattttatcggtgtcga 5579652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 5635910 - 5635940
Alignment:
Q  5 attgaattatgtcattttcttaaaattttat 35  Q
    |||||||||||||||||||||||||||||||    
T  5635910 attgaattatgtcattttcttaaaattttat 5635940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26915258 - 26915310
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgt 53  Q
    ||||||| |||||||||||||||| ||||||||||| | ||||| ||||||||    
T  26915258 ttacattaaattatgtcattttctcaaaattttatccgtgtcgacgtgtccgt 26915310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 42874563 - 42874511
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgt 53  Q
    |||||||||||||||||||||||| ||||| ||| ||| ||||| ||||||||    
T  42874563 ttacattgaattatgtcattttctcaaaatgttaacggtgtcgacgtgtccgt 42874511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 22600566 - 22600521
Alignment:
Q  5 attgaattatgtcattttcttaaaattttatcggcgtcgatgtgtc 50  Q
    ||||||||||||||||||||| ||||||||| || || ||||||||    
T  22600566 attgaattatgtcattttctttaaattttattggtgttgatgtgtc 22600521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27733888 - 27733851
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatcgg 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  27733888 ttacattgaattatatcattttctcaaaattttatcgg 27733851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 34589724 - 34589776
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgt 53  Q
    |||||||||||||||||||||||| ||| | ||||||| ||| ||||||||||    
T  34589724 ttacattgaattatgtcattttctcaaattgttatcggtgtcaatgtgtccgt 34589776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 13307918 - 13307883
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  13307918 ttacattgaattatgtcattttctcaaaattttatc 13307883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 28663533 - 28663498
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  28663533 ttacattgaattatgtcattttctcaaaattttatc 28663498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 56049917 - 56049847
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgttttgtgtctggtgtccgtg 72  Q
    |||||||||| |||||||||| || ||| | ||||||| |||||||||||||| | ||||| ||||||||||    
T  56049917 ttacattgaactatgtcattt-ctcaaattattatcggtgtcgatgtgtccgtgtcgtgtccggtgtccgtg 56049847  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 9298972 - 9298943
Alignment:
Q  3 acattgaattatgtcattttcttaaaattt 32  Q
    ||||||||||||||||||||||||||||||    
T  9298972 acattgaattatgtcattttcttaaaattt 9298943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44362707 - 44362670
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatcgg 38  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  44362707 ttacattaaattatgtcattttctcaaaattttatcgg 44362670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 30080519 - 30080554
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  30080519 ttacattgaattatgtcattttctcaaaattttatc 30080554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26205778 - 26205815
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatcgg 38  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  26205778 ttacactgaattatgtcattttctcaaaattttatcgg 26205815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 309190 - 309150
Alignment:
Q  10 attatgtcattttcttaaaattttatcggcgtcgatgtgtc 50  Q
    ||||||||||||||| ||||||||||||| ||||| |||||    
T  309190 attatgtcattttctcaaaattttatcggtgtcgacgtgtc 309150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24399661 - 24399707
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatcggcgtcgatgt 47  Q
    |||||||||||||||||||| ||| |||| |||||| ||||||||||    
T  24399661 ttacattgaattatgtcattgtctcaaaaatttatcagcgtcgatgt 24399707  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 14338501 - 14338537
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatcg 37  Q
    |||||||||||||||||||||| | ||||||||||||    
T  14338501 ttacattgaattatgtcattttttcaaaattttatcg 14338537  T

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Target: scaffold0314 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8989 - 8953
Alignment:
Q  1 ttacattgaattatgtcattttcttaaaattttatcg 37  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  8989 ttacgttgaattatgtcattttctcaaaattttatcg 8953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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