View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13071_low_2 (Length: 741)
Name: NF13071_low_2
Description: NF13071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13071_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 348 - 728
Target Start/End: Complemental strand, 25881310 - 25880939
Alignment:
| Q |
348 |
ttgaatatgaggatgaggattgagaaagtgaagtaggtttgtatttatttatgaagagaaatatcaatactatagggaagatgagattttaatttggtgg |
447 |
Q |
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| T |
25881310 |
ttgaatatgaggatgaggattgagaaagtgaagtaggtttgtatttatttatgaagagaaatatcaatactatggggaagatgagattttaatttggtgg |
25881211 |
T |
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| Q |
448 |
ggtccatttggcgccaaaaagatgattgattttgttaatgaaaagagtggagtgaaagagaagtaacatgatattgtaataatgtctgtatttggataca |
547 |
Q |
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| T |
25881210 |
ggtccatttggcgccaaaaagatgattgattttgttaatgaaaagagtggagtgaaagagaagtaacatgatattgtaataatgtctgtatttggataca |
25881111 |
T |
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| Q |
548 |
atacaacatgaaattggatcaatggatttggaaattatgttgagtttctaatgttgaaatgattgtttatgattgtgctcaacagtgaagtta-gttata |
646 |
Q |
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| T |
25881110 |
atacaacatgaaattggatcaatggatttggaaattatgttgagtttctaatgttgaaatga----------ttgtgctcaacagtgaagttaggttata |
25881021 |
T |
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| Q |
647 |
acatgatcattttagaagtgaagagtgttcggtcggattctttattttgactaaattgtttgtgaatggtacttgagtgatg |
728 |
Q |
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| T |
25881020 |
acatgatcattttagaagtgaagagtgttcggtcggattctttattttgactaaattgtttgtgaatggtacttgagtgatg |
25880939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 25881622 - 25881459
Alignment:
| Q |
21 |
agtccaataccgacgacacgggagtcaggctccccggagatgttggagcagctaatgccggaccagtgacagggtgtaaggtcgttttcgttccagtcgg |
120 |
Q |
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| T |
25881622 |
agtccaataccgacgacacgggagtcaggctccccggagatgttggagcagctaatgccggaccagtgacagggtgtaaggtcgttttcgttccagtcgg |
25881523 |
T |
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| Q |
121 |
agaatgtagttgcggtgtcgccgccgtcgacggcggatttgagtgtcagaagagcgaggccgtc |
184 |
Q |
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| T |
25881522 |
agaatgtagttgcggtgtcaccgccgtcgacggcggatttgagtgttagaagagcgaggccgtc |
25881459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 25881399 - 25881313
Alignment:
| Q |
244 |
taatttgcatttagaatttgaagtacgacgccgttttgggtt----------gagttaagtacggtacggtgagttcagttgagttc |
320 |
Q |
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| T |
25881399 |
taatttgcatttagaatttgaagtacgacgccgttttgggttgtgttggttagagttaagtacggtacggtgagttcagttgagttc |
25881313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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