View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13071_low_3 (Length: 569)
Name: NF13071_low_3
Description: NF13071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13071_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 20 - 545
Target Start/End: Original strand, 52511842 - 52512387
Alignment:
| Q |
20 |
tagtatacataccttctaagaatttggaagtaggcgtccattatacatcttatcaagcagtttctttgcgtcaggcctcctgagaagacctttattgttt |
119 |
Q |
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| T |
52511842 |
tagtatacataccttctaagaattgggaagtaggcgtccattatacatcttatcaagcagtttctttgcgtcaggcctcctgagaagacctttattgttt |
52511941 |
T |
|
| Q |
120 |
ggcacaccagttcctaaacaaacagggcagacaagctttcctcgacctacggaaaatctgtcaatttagtcgtttactaagnnnnnnnngaaatgagcaa |
219 |
Q |
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| T |
52511942 |
ggcacaccagttcctaaacaaacagggcagacaagctttcctcgacctacggaaaatcagtcaatttagtcgtttactaag-aaaaaaagaaatgagcaa |
52512040 |
T |
|
| Q |
220 |
agtagaagaatgaatgataccataacaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcctgtacca |
319 |
Q |
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| T |
52512041 |
attagaagaatgaatgataccataacaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcctgtacca |
52512140 |
T |
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| Q |
320 |
ccacacatatcacct----------aaatgaaaagtagtattataataaggaagaagaatattattat-----------taaaaaagaatgaggagaaaa |
398 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| ||| ||||||||| ||||||| |
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| T |
52512141 |
ccacacatatcacctaaatgaaatgaaatgaaaagtagtattataataaggaagaatattattattattattattattataacaaagaatgaagagaaaa |
52512240 |
T |
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| Q |
399 |
gagaagaggactcacaaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggttgcattaattaa |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512241 |
gagaagaggactcacaaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggttgcattaattaa |
52512340 |
T |
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| Q |
499 |
aaatggagttgaacacaaacatttaagacattgacgcctcgaaacaa |
545 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512341 |
aaatggagttgaacacaaacatttaagacattgacgcctcgaaacaa |
52512387 |
T |
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